ggKbase home page

scnpilot_p_inoc_scaffold_56

Search features with annotation key words

Displaying items 91-120 of 419 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_56_91
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96927..98291)
DNA (1365bp) protein (455aa)
RNA helicase n=1 Tax=Dyella japonica RepID=UPI0002F0752C rbh
RNA helicase
RNA helicase {ECO:0000313|EMBL:AHX12437.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_p_inoc_scaffold_56_92
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(98515..99099)
DNA (585bp) protein (195aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=267608 species="Ba
Probable 2h phosphoesterase (2'-5' rna ligase) protein n=1 Tax=Ralstonia solanacearum (strain GMI1000) RepID=Q8XWV6_RALSO
hypothetical protein
scnpilot_p_inoc_scaffold_56_93
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99096..99779)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAE9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96440.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_p_inoc_scaffold_56_94
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99906..100439
DNA (534bp) protein (178aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5L3_9GAMM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_p_inoc_scaffold_56_95
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

100442..101107
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTE7_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88280.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
scnpilot_p_inoc_scaffold_56_96
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101181..102830)
DNA (1650bp) protein (550aa)
Carboxypeptidase-like protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9N1_9GAMM
Carboxypeptidase-like protein {ECO:0000313|EMBL:EIL96172.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanoba
peptidase S10
scnpilot_p_inoc_scaffold_56_97
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(103005..104660)
DNA (1656bp) protein (552aa)
Carboxypeptidase-like protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9N1_9GAMM rbh
Carboxypeptidase-like protein {ECO:0000313|EMBL:EIL96172.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanoba
peptidase S10
scnpilot_p_inoc_scaffold_56_98
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(104882..106513)
DNA (1632bp) protein (544aa)
Carboxypeptidase C (Cathepsin A) n=1 Tax=Rhodanobacter denitrificans RepID=I4WUY4_9GAMM
peptidase S10
Peptidase S10 {ECO:0000313|EMBL:AHX15186.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_p_inoc_scaffold_56_99
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(106648..108858)
DNA (2211bp) protein (737aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B67ED9
Uncharacterized protein {ECO:0000313|EMBL:KFN46555.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli
hypothetical protein
scnpilot_p_inoc_scaffold_56_100
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(109184..111379)
DNA (2196bp) protein (732aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B67ED9
Uncharacterized protein {ECO:0000313|EMBL:KFN46555.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli
hypothetical protein
scnpilot_p_inoc_scaffold_56_101
RBG_19FT_COMBO_Chloroflexi_49_13_curated, Chloroflexi, Bacteria

Not on your lists

comp(111525..111890)
DNA (366bp) protein (122aa)
hypothetical protein Tax=RBG_19FT_COMBO_Chloroflexi_49_13_curated
Putative uncharacterized protein id=1751281 bin=GWB2_Chloroflexi_54_36 species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein
scnpilot_p_inoc_scaffold_56_102
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111899..112804)
DNA (906bp) protein (302aa)
thioredoxin n=1 Tax=Dyella japonica RepID=UPI0002E7A262
thioredoxin
Thioredoxin {ECO:0000313|EMBL:AIF47414.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_p_inoc_scaffold_56_103
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(112975..114387)
DNA (1413bp) protein (471aa)
Amidohydrolase, imidazolonepropionase n=1 Tax=Rhodanobacter denitrificans RepID=M4NKL6_9GAMM rbh
amidohydrolase, imidazolonepropionase
Amidohydrolase, imidazolonepropionase {ECO:0000313|EMBL:AGG90627.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanob
scnpilot_p_inoc_scaffold_56_104
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(114482..114976)
DNA (495bp) protein (165aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Pseudomonas stutzeri RepID=UPI000314DF9C
3-demethylubiquinone-9 3-methyltransferase
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:AHX15158.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dye
scnpilot_p_inoc_scaffold_56_105
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(115258..116706)
DNA (1449bp) protein (483aa)
Candidate amino acid permease n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XY70_RAMTT rbh
amino acid permease Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
amino acid permease
scnpilot_p_inoc_scaffold_56_106
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(116734..117639)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4F5_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG93802.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouine
scnpilot_p_inoc_scaffold_56_107
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


118110..121046
DNA (2937bp) protein (979aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1163408 species="Bacteria; Proteo
leuS; leucine--tRNA ligase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJC5_9GAMM
scnpilot_p_inoc_scaffold_56_108
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121307..121897
DNA (591bp) protein (197aa)
Rare lipoprotein B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQM1_9GAMM
LPS-assembly lipoprotein LptE {ECO:0000256|HAMAP-Rule:MF_01186, ECO:0000256|SAAS:SAAS00074334}; Flags: Precursor;; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales
Rare lipoprotein B
scnpilot_p_inoc_scaffold_56_109
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121900..122928
DNA (1029bp) protein (343aa)
DNA polymerase III subunit delta n=1 Tax=Dyella japonica RepID=UPI000316FDAB
DNA polymerase III subunit delta {ECO:0000313|EMBL:KGI77782.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiag
DNA polymerase III subunit delta
scnpilot_p_inoc_scaffold_56_110
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

123029..123697
DNA (669bp) protein (223aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244};
nicotinate/nicotinamide nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQM3_9GAMM
scnpilot_p_inoc_scaffold_56_111
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

124004..124336
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003771C07
iojap family protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jia
scnpilot_p_inoc_scaffold_56_112
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

124485..124955
DNA (471bp) protein (157aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rR
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5P3_9GAMM
50S rRNA methyltransferase
scnpilot_p_inoc_scaffold_56_113
Rhodobacteraceae bacterium HTCC2150, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125234..126613
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JSI3_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EBA03384.1}; TaxID=388401 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium HTCC
Fic family protein
scnpilot_p_inoc_scaffold_56_114
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

126749..127012
DNA (264bp) protein (88aa)
Protein containing DUF497 n=1 Tax=mine drainage metagenome RepID=T1D386_9ZZZZ
protein of unknown function DUF497 Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
hypothetical protein
scnpilot_p_inoc_scaffold_56_115
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

127384..127641
DNA (258bp) protein (86aa)
Antitoxin of toxin-antitoxin stability system n=1 Tax=Rhodanobacter sp. 115 RepID=I4WP65_9GAMM
Antitoxin of toxin-antitoxin stability system {ECO:0000313|EMBL:EIM01257.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" s
hypothetical protein
scnpilot_p_inoc_scaffold_56_116
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

128431..129120
DNA (690bp) protein (230aa)
Response regulator receiver protein n=2 Tax=Microcystis aeruginosa RepID=I4FSR7_MICAE
Hybrid sensory kinase in two-component regulatory system with RcsB and YojN {ECO:0000313|EMBL:EPF20266.1}; TaxID=482300 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcys
response regulator receiver protein
scnpilot_p_inoc_scaffold_56_117
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

129219..129791
DNA (573bp) protein (191aa)
Maf-like protein UU5_15875 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPT2_9GAMM
Maf-like protein UU5_15875 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanob
MAF protein
scnpilot_p_inoc_scaffold_56_118
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

129931..131412
DNA (1482bp) protein (494aa)
ribonuclease G n=1 Tax=Dyella japonica RepID=UPI0003160861
Ribonuclease G {ECO:0000313|EMBL:KJV30862.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
ribonuclease G
scnpilot_p_inoc_scaffold_56_119
unknown

Not on your lists

131396..132142
DNA (747bp) protein (249aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_56_120
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132139..136104
DNA (3966bp) protein (1322aa)
TIGR02099 family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NC28_9GAMM rbh
TIGR02099 family protein
TIGR02099 family protein {ECO:0000313|EMBL:AGG88169.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sour
Displaying items 91-120 of 419 in total

View Taxonomy