ggKbase home page

scnpilot_p_inoc_scaffold_58

Search features with annotation key words

Displaying items 241-270 of 287 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_58_241
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(281857..282567)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000374CEF5
Uncharacterized protein {ECO:0000313|EMBL:KJV26462.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojue
scnpilot_p_inoc_scaffold_58_242
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(282599..283117)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037224FD
Uncharacterized protein {ECO:0000313|EMBL:KJV26461.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojue
scnpilot_p_inoc_scaffold_58_243
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(283114..283935)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000366F201
Uncharacterized protein {ECO:0000313|EMBL:KJV26460.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojue
scnpilot_p_inoc_scaffold_58_244
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(284066..284629)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKQ7_9GAMM
Protein of unknown function (DUF3106)
Uncharacterized protein {ECO:0000313|EMBL:EIM00049.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
scnpilot_p_inoc_scaffold_58_245
unknown

Not on your lists

comp(284632..285072)
DNA (441bp) protein (147aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_58_246
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(285069..285704)
DNA (636bp) protein (212aa)
RNA polymerase sigma70 factor n=1 Tax=Dyella japonica RepID=UPI0002EAD3E6
RNA polymerase sigma70 factor {ECO:0000313|EMBL:KJV30974.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter
sigma-70 family RNA polymerase sigma factor
scnpilot_p_inoc_scaffold_58_247
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

285803..286105
DNA (303bp) protein (101aa)
Pyruvate kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WH74_9GAMM
NAD(P) transhydrogenase
hypothetical protein Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_p_inoc_scaffold_58_248
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

286105..287577
DNA (1473bp) protein (491aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}
NAD(P) transhydrogenase subunit beta n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKQ3_9GAMM rbh
NAD/NADP transhydrogenase beta subunit
scnpilot_p_inoc_scaffold_58_249
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(287677..288150)
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:AGG88095.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
scnpilot_p_inoc_scaffold_58_250
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(288307..290280)
DNA (1974bp) protein (658aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000376EF43
Transcriptional regulator {ECO:0000313|EMBL:KGQ20597.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdo
transcriptional regulator domain-containing protein
scnpilot_p_inoc_scaffold_58_251
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

290456..291514
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Amycolatopsis methanolica RepID=UPI0003786ABF
hypothetical protein Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
hypothetical protein
scnpilot_p_inoc_scaffold_58_252
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

291753..292310
DNA (558bp) protein (186aa)
Putative FeS assembly SUF system protein SufT n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUY3_9GAMM
Putative FeS assembly SUF system protein SufT {ECO:0000313|EMBL:EIL91024.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" s
putative FeS assembly SUF system protein SufT
scnpilot_p_inoc_scaffold_58_253
unknown

Not on your lists

292343..292783
DNA (441bp) protein (147aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_58_254
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(292934..293422)
DNA (489bp) protein (163aa)
L-asparaginase/GlutRNAGln amidotransferase subunit D (EC:3.5.1.1)
Putative asparaginase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WT97_9GAMM
Asparaginase {ECO:0000313|EMBL:KGI77194.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_p_inoc_scaffold_58_255
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

293599..293925
DNA (327bp) protein (109aa)
preprotein translocase subunit YajC n=1 Tax=Dyella japonica RepID=UPI000312F397
preprotein translocase subunit YajC
Preprotein translocase subunit YajC {ECO:0000313|EMBL:AHX12337.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jia
scnpilot_p_inoc_scaffold_58_256
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

293981..295840
DNA (1860bp) protein (620aa)
preprotein translocase subunit SecD n=1 Tax=Dyella japonica RepID=UPI00030CCB9C rbh
secD; preprotein translocase subunit SecD
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella ja
scnpilot_p_inoc_scaffold_58_257
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

295888..296850
DNA (963bp) protein (321aa)
Protein-export membrane protein SecF n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNA9_9GAMM rbh
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source
protein translocase subunit secF
scnpilot_p_inoc_scaffold_58_258
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(296851..299706)
DNA (2856bp) protein (952aa)
RNA polymerase-associated protein RapA {ECO:0000256|SAAS:SAAS00017181}; EC=3.6.4.- {ECO:0000256|SAAS:SAAS00017178};; Flags: Fragment;; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacte
helicase SNF2 n=1 Tax=Dyella ginsengisoli RepID=UPI00034AA934
helicase SNF2
scnpilot_p_inoc_scaffold_58_259
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(299870..300547)
DNA (678bp) protein (226aa)
PKHD-type hydroxylase UU5_17027 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadale
PKHD-type hydroxylase UU5_17027 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VN34_9GAMM rbh
Fe(II)-dependent oxygenase
scnpilot_p_inoc_scaffold_58_260
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(300554..301357)
DNA (804bp) protein (268aa)
Catecholate siderophore receptor Fiu n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5K7_9GAMM
Catecholate siderophore receptor Fiu {ECO:0000313|EMBL:EIL94748.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rh
catecholate siderophore receptor Fiu
scnpilot_p_inoc_scaffold_58_261
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

301854..302567
DNA (714bp) protein (238aa)
hypothetical protein Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_p_inoc_scaffold_58_262
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(303120..305273)
DNA (2154bp) protein (718aa)
Putative metalloendopeptidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VN32_9GAMM rbh
Putative metalloendopeptidase {ECO:0000313|EMBL:EIL88623.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanoba
peptidase
scnpilot_p_inoc_scaffold_58_263
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

305465..306883
DNA (1419bp) protein (473aa)
beta-lactamase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B59D34 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN41426.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryzite
RNA-metabolising metallo-beta-lactamase
scnpilot_p_inoc_scaffold_58_264
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(306873..307112)
DNA (240bp) protein (80aa)
translation initiation factor IF-1 n=1 Tax=Dyella japonica RepID=UPI0002FDA47B
translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Lut
scnpilot_p_inoc_scaffold_58_265

Not on your lists

comp(307188..307496)
DNA (309bp) protein (103aa)
Putative polyhydroxyalkanoic acid system protein n=2 Tax=mine drainage metagenome RepID=T0ZK36_9ZZZZ
Putative polyhydroxyalkanoic acid system protein {ECO:0000313|EMBL:EQD30175.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
scnpilot_p_inoc_scaffold_58_266
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

307530..308279
DNA (750bp) protein (250aa)
FHA domain-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WEV6_9GAMM
FHA domain-containing protein {ECO:0000313|EMBL:EIL97997.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanoba
forkhead-associated protein
scnpilot_p_inoc_scaffold_58_267
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

308445..309530
DNA (1086bp) protein (362aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1162
Phosphoserine aminotransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VZ24_9GAMM
MFS transporter
scnpilot_p_inoc_scaffold_58_268
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

309523..310662
DNA (1140bp) protein (380aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID
histidinol-phosphate aminotransferase (EC:2.6.1.-)
histidinol-phosphate aminotransferase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B475DD
scnpilot_p_inoc_scaffold_58_269
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

310659..311969
DNA (1311bp) protein (437aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Dyella japonica RepID=UPI0002D43239 rbh
scnpilot_p_inoc_scaffold_58_270
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

312000..312683
DNA (684bp) protein (228aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:
Cytidylate kinase n=2 Tax=mine drainage metagenome RepID=T0ZBV9_9ZZZZ
cytidylate kinase
Displaying items 241-270 of 287 in total

View Taxonomy