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scnpilot_p_inoc_scaffold_80

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Displaying items 541-570 of 577 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_80_541
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(554203..555999)
DNA (1797bp) protein (599aa)
Single-stranded-DNA-specific exonuclease n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6U9_9SPHN
recombinase RecJ
Single-stranded-DNA-specific exonuclease {ECO:0000313|EMBL:EHJ62995.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
scnpilot_p_inoc_scaffold_80_542
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

556202..556948
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VCI8_9SPHN
Scaffold6, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32213.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
hypothetical protein
scnpilot_p_inoc_scaffold_80_543
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

556933..557556
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002F1D835
Uncharacterized protein {ECO:0000313|EMBL:KEO98843.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter
hypothetical protein
scnpilot_p_inoc_scaffold_80_544
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

557587..558207
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZX10_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL23214.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_p_inoc_scaffold_80_545
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

558239..558778
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B62644
Uncharacterized protein {ECO:0000313|EMBL:GAO56073.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_p_inoc_scaffold_80_546
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(558775..560151)
DNA (1377bp) protein (459aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAA
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=TRMFO_NOVAD rbh
gid; tRNA (uracil-5-)-methyltransferase Gid
scnpilot_p_inoc_scaffold_80_547
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(560421..560768)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2H2T5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS48976.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
hypothetical protein
scnpilot_p_inoc_scaffold_80_548
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(560765..563512)
DNA (2748bp) protein (916aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897, ECO:0000256|SAAS:SAAS00075954};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteri
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G715_NOVAD rbh
scnpilot_p_inoc_scaffold_80_549
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

563837..565093
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NAD2_ERYLH
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
hypothetical protein
scnpilot_p_inoc_scaffold_80_550
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(565166..565831)
DNA (666bp) protein (222aa)
carbonate dehydratase (EC:4.2.1.1)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
Carbonic anhydrase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G713_NOVAD rbh
scnpilot_p_inoc_scaffold_80_551
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

565975..566934
DNA (960bp) protein (320aa)
lipoic acid synthetase (EC:2.8.1.8)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206, ECO:0000313|EMBL:CCA93400.1};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|
Lipoyl synthase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPP8_9SPHN rbh
scnpilot_p_inoc_scaffold_80_552
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

566942..567382
DNA (441bp) protein (147aa)
Oligoketide cyclase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VTY7_9SPHN
Oligoketide cyclase {ECO:0000313|EMBL:EJU14115.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH
cyclase
scnpilot_p_inoc_scaffold_80_553
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(567386..567913)
DNA (528bp) protein (176aa)
Competence protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J493_9SPHN
Competence protein {ECO:0000313|EMBL:EQB18960.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium
CinA-like protein
scnpilot_p_inoc_scaffold_80_554
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(567910..568440)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WJD4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ80333.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
scnpilot_p_inoc_scaffold_80_555
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(568440..569687)
DNA (1248bp) protein (416aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60 4.6.1.12)
Bifunctional enzyme IspD/IspF n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I3G5_9SPHN rbh
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
scnpilot_p_inoc_scaffold_80_556
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

569690..570703
DNA (1014bp) protein (338aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphing
tRNA-dihydrouridine synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G707_NOVAD
dihydrouridine synthase TIM-barrel protein nifR3
scnpilot_p_inoc_scaffold_80_557
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

570703..571857
DNA (1155bp) protein (385aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EIZ5_9SPHN rbh
histidine kinase
scnpilot_p_inoc_scaffold_80_558
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

571863..573278
DNA (1416bp) protein (472aa)
Two-component system NtrC family nitrogen regulation response regulator GlnG n=1 Tax=Sphingomonas sp. LH128 RepID=J8SMR9_9SPHN rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:KHK91514.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
two component sigma-54 specific Fis family transcriptional regulator
scnpilot_p_inoc_scaffold_80_559
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

573355..575613
DNA (2259bp) protein (753aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EIZ7_9SPHN rbh
ATPase
scnpilot_p_inoc_scaffold_80_560
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

575639..577024
DNA (1386bp) protein (462aa)
Two component, sigma54 specific, fis family transcriptional regulator n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPN9_9SPHN rbh
ATPase AAA {ECO:0000313|EMBL:KHK91513.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysie
two component, sigma-54 specific, transcriptional regulator, Fis family
scnpilot_p_inoc_scaffold_80_561
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

577161..577760
DNA (600bp) protein (200aa)
RNA-binding protein Hfq n=1 Tax=Sphingomonas sp. LH128 RepID=J8W339_9SPHN
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novos
hfq; RNA-binding protein Hfq
scnpilot_p_inoc_scaffold_80_562
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

577865..579085
DNA (1221bp) protein (407aa)
GTPase HflX n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EJ00_9SPHN rbh
GTPase HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphin
scnpilot_p_inoc_scaffold_80_563
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(579288..580067)
DNA (780bp) protein (260aa)
MazG family protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G700_NOVAD rbh
MazG family protein
MazG family protein {ECO:0000313|EMBL:ABD26373.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium
scnpilot_p_inoc_scaffold_80_564
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(580155..581429)
DNA (1275bp) protein (425aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEK9_NOVAD rbh
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABP64370.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="
scnpilot_p_inoc_scaffold_80_565
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(581460..582251)
DNA (792bp) protein (264aa)
2-keto-4-pentenoate hydratase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEL0_NOVAD rbh
2-keto-4-pentenoate hydratase-like protein
2-keto-4-pentenoate hydratase-like protein {ECO:0000313|EMBL:ABP64371.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" s
scnpilot_p_inoc_scaffold_80_566
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(582358..583863)
DNA (1506bp) protein (502aa)
D-altronate dehydratase (EC:4.2.1.7)
D-altronate dehydratase {ECO:0000313|EMBL:ABP64372.1}; EC=4.2.1.7 {ECO:0000313|EMBL:ABP64372.1};; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadal
D-altronate dehydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEL1_NOVAD rbh
scnpilot_p_inoc_scaffold_80_567
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

584029..585048
DNA (1020bp) protein (340aa)
LacI family transcription regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B75363 rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:KHS44446.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source=
LacI family transcription regulator
scnpilot_p_inoc_scaffold_80_568
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

585174..586010
DNA (837bp) protein (279aa)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; EC=5.3.1.17 {ECO:0000256|HAMAP-Rule:MF_00687};; 5-keto-4-deoxyuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00687
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC:5.3.1.17)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L3D1_9SPHN rbh
scnpilot_p_inoc_scaffold_80_569
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

586018..586782
DNA (765bp) protein (255aa)
2-deoxy-D-gluconate 3-dehydrogenase; K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125] Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
3-ketoacyl-ACP reductase n=1 Tax=Blastomonas sp. AAP53 RepID=UPI000301DC3C rbh
2-deoxy-D-gluconate 3-dehydrogenase
scnpilot_p_inoc_scaffold_80_570
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

586779..587801
DNA (1023bp) protein (341aa)
UPI0003D03773 related cluster n=1 Tax=unknown RepID=UPI0003D03773 rbh
2-keto-3-deoxygluconate kinase {ECO:0000313|EMBL:ESZ87717.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomo
ribokinase-like domain-containing protein
Displaying items 541-570 of 577 in total

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