ggKbase home page

scnpilot_p_inoc_scaffold_1288_7

Organism: SCNpilot_P_inoc_Novosphingobium_62_280

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 11 / 38
Location: comp(4212..5312)

Top 3 Functional Annotations

Value Algorithm Source
Type IV secretory pathway, VirB10 component n=1 Tax=Novosphingobium sp. AP12 RepID=J2FUE7_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 56.9
  • Coverage: 369.0
  • Bit_score: 372
  • Evalue 4.50e-100
Scaffold2, whole genome shotgun sequence {ECO:0000313|EMBL:KIS33837.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so similarity UNIPROT
DB: UniProtKB
  • Identity: 58.7
  • Coverage: 366.0
  • Bit_score: 381
  • Evalue 1.00e-102
type VI secretion protein similarity KEGG
DB: KEGG
  • Identity: 56.4
  • Coverage: 369.0
  • Bit_score: 373
  • Evalue 7.50e-101

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium sp. P6W → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1101
ATGTCCGTGTCCTTTCGGGAAAAGACGGCGGGAAGCGATCAGAATGATCAGGATCCGCGCGGGCAGCGAGTCGAGGTCGATCTGGCAACACGGTCTGTCTTGCCCGAGGTTGTTGGCAGAAAGCCAGCCTCTGATGCTGTAGGTGTGGCCGTGGGGGTGCTTGGTGTCGCATTATTGGGTGGAATAACACTATGGGCGATGAGCGGAGCCCGACAGGCGCAGCCAGCGACAGTGGCCGCGCCTGTGACCAGCCCCGCACCTGCGGCATTACCAACGCCCGCGCCGATAACCCCACCGACAGTGCCGCCGCAAGCTATCACCGATGTGCCACCACCCGCGCCACCACCCGCACCAAATCCTGTAGTACAAGGTAGCCCGGCACCTGCTAACCATTACGCATCACCCACCGTCGTTTATGATGCAACAGCGCCATCATCGATTGGTGGTCCTGTTGCTGGCGGCCAAGTGGCATTAGGGCCTGCCGCACCGACGGGGGGGGACGACTTTACCCGCCGGATAGGAGGCGTGGGGGGAGGGCCGGCAACTGCGACTGCCAGCTTCAACCCGACAACAACCATTGCGCAAGGCACGATGATTCCGGCCGTACTGGAAACAGCAATCAATACCGATTTGCCGGGTTATGTGCGCGCTGTAGTGAGCGCCGATATCCGCTCGTTTGACGGAAAAGCGGTACTGGTGCCGAGGTCCTCGCGCTTGGTCGGTGAATATAAGAGCGGATTGCAGGCCGGTCAAAAACGTGCCTATGTTATATGGACAAGGCTGATCCGCCCAGACGGCATTTCTGTCGCCTTGAATTCTCCCGCGGTCACCTTTTCGGGCGAAACAGGTTTGGCCGGTCGAGTGAATTCCCATTTCTTCGAGCGATTTGGTTCGGCGATGCTCCTCTCTGTCGTGGGCAATTTGGGTAATATCATTGGCAACAATTCATCTACCATCGTGCTTGGCGGCGGTCAGTCGGCCGCGGCAGCCGCAATCGGACAGACAGGGCAGATCGCTCCTACGGTAAAGGTCAGACAAGGCTTGCCCATCCGAGTATTCACTGCGCGTGATCTGGATTTTTCTAAGGCACCTTTGCCATGA
PROTEIN sequence
Length: 367
MSVSFREKTAGSDQNDQDPRGQRVEVDLATRSVLPEVVGRKPASDAVGVAVGVLGVALLGGITLWAMSGARQAQPATVAAPVTSPAPAALPTPAPITPPTVPPQAITDVPPPAPPPAPNPVVQGSPAPANHYASPTVVYDATAPSSIGGPVAGGQVALGPAAPTGGDDFTRRIGGVGGGPATATASFNPTTTIAQGTMIPAVLETAINTDLPGYVRAVVSADIRSFDGKAVLVPRSSRLVGEYKSGLQAGQKRAYVIWTRLIRPDGISVALNSPAVTFSGETGLAGRVNSHFFERFGSAMLLSVVGNLGNIIGNNSSTIVLGGGQSAAAAAIGQTGQIAPTVKVRQGLPIRVFTARDLDFSKAPLP*