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scnpilot_p_inoc_scaffold_4075

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_4075_1
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(260..1303)
DNA (1044bp) protein (348aa)
transcriptional regulator n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B3C9B3
Uncharacterized protein {ECO:0000313|EMBL:EQB32655.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium umm
LacI-family transcriptional regulator
scnpilot_p_inoc_scaffold_4075_2
Natrinema versiforme, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1381..1761)
DNA (381bp) protein (127aa)
Response regulator receiver protein n=1 Tax=Natrinema versiforme JCM 10478 RepID=L9YB51_9EURY
Response regulator receiver protein {ECO:0000313|EMBL:ELY70942.1}; TaxID=1227496 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema versiforme J
response regulator receiver
scnpilot_p_inoc_scaffold_4075_3
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1758..4085)
DNA (2328bp) protein (776aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;"
histidine kinase n=1 Tax=Burkholderia thailandensis RepID=UPI00016A3D6D rbh
hypothetical protein
scnpilot_p_inoc_scaffold_4075_4
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4054..5874)
DNA (1821bp) protein (607aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00036053FE
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor
scnpilot_p_inoc_scaffold_4075_5
unknown

Not on your lists

comp(6120..6209)
DNA (90bp) protein (30aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_4075_6
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6339..6809)
DNA (471bp) protein (157aa)
AsnC family transcriptional regulator n=2 Tax=Sphingobium RepID=T0I0U5_9SPHN
AsnC family transcriptional regulator {ECO:0000313|EMBL:EPR15998.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="S
AsnC-family transcriptional regulator
scnpilot_p_inoc_scaffold_4075_7
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6904..7488
DNA (585bp) protein (195aa)
MarR family transcriptional regulator n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002887142
transcriptional regulator marR/emrR family protein Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
MarR family transcriptional regulator
scnpilot_p_inoc_scaffold_4075_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7553..9925)
DNA (2373bp) protein (791aa)
Outer membrane autotransporter barrel protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAY1_NOVAD rbh
Outer membrane autotransporter barrel protein
Outer membrane autotransporter barrel protein {ECO:0000313|EMBL:ABD24992.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae
scnpilot_p_inoc_scaffold_4075_9
unknown

Not on your lists

10150..10509
DNA (360bp) protein (120aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_4075_10
unknown

Not on your lists

10531..10791
DNA (261bp) protein (87aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_4075_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10829..11482
DNA (654bp) protein (218aa)
Sigma-24 (FecI-like) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAY0_NOVAD
RNA polymerase sigma factor {ECO:0000313|EMBL:KHS43418.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphin
RNA polymerase sigma factor
scnpilot_p_inoc_scaffold_4075_12
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11479..12252
DNA (774bp) protein (258aa)
Protein kinase n=1 Tax=Rhodococcus opacus M213 RepID=K8Y4P8_RHOOP
Protein kinase {ECO:0000313|EMBL:EKT84765.1}; TaxID=1129896 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
scnpilot_p_inoc_scaffold_4075_13
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12708..13931
DNA (1224bp) protein (408aa)
Symbiosis island integrase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S3G2_9SPHN rbh
symbiosis island integrase rbh
Symbiosis island integrase {ECO:0000313|EMBL:AGH50316.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
scnpilot_p_inoc_scaffold_4075_14
unknown

Not on your lists

14188..14367
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_4075_15
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14701..15354
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EB92_9SPHN
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
scnpilot_p_inoc_scaffold_4075_16
unknown

Not on your lists

15515..15901
DNA (387bp) protein (129aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_4075_17
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16100..16555
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B33A31
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
hypothetical protein
scnpilot_p_inoc_scaffold_4075_18
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16853..18358
DNA (1506bp) protein (502aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteracea
Probable sensor protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NCJ5_ERYLH rbh
sensor protein
scnpilot_p_inoc_scaffold_4075_19
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18349..18519
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0I0G8_9SPHN
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:KFG88972.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
Displaying 19 items

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