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scnpilot_dereplicated_Eukaryote_unknown_15

SCNpilot_P_inoc_unknown_51_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.62 Longest contig: 48.83 Kbp Bin length: 1.07 Mbp GC content: 51.36 %
Contigs count: 183 Features count: 909 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 BSCG 2 / 51 ASCG 0 / 38

Description

not clear on coverage ESOM

Displaying items 51-100 of 183 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_8877 3 5110 bp 55.36 3.55 46.03
scnpilot_p_inoc_scaffold_9320 4 4923 bp 52.98 3.81 46.07
scnpilot_p_inoc_scaffold_10824 4 4436 bp 51.24 6.59 46.53
scnpilot_p_inoc_scaffold_8816 5 5130 bp 49.73 4.80 47.89
scnpilot_p_inoc_scaffold_7603 4 5701 bp 52.36 4.81 47.94
scnpilot_p_inoc_scaffold_12151 6 4086 bp 52.30 5.69 48.31
scnpilot_p_inoc_scaffold_9109 4 5013 bp 53.50 4.43 49.01
scnpilot_p_inoc_scaffold_7514 7 5742 bp 54.70 4.10 49.37
scnpilot_p_inoc_scaffold_4128
Class: Bacilli (66.67%)
3 8616 bp 53.95 3.85 49.76
scnpilot_p_inoc_scaffold_4859 4 7740 bp 53.33 4.65 49.96
scnpilot_p_inoc_scaffold_9751 3 4781 bp 52.00 3.92 50.45
scnpilot_p_inoc_scaffold_7579
Species: Guillardia theta (50%)
2 5714 bp 54.20 4.46 50.67
scnpilot_p_inoc_scaffold_4012 10 8782 bp 50.99 3.83 50.73
scnpilot_p_inoc_scaffold_7635 4 5686 bp 52.99 4.41 51.02
scnpilot_p_inoc_scaffold_12069 6 4108 bp 49.12 3.40 51.19
scnpilot_p_inoc_scaffold_9041
Species: CG_Delta_07 (50%)
2 5044 bp 55.87 4.16 51.69
scnpilot_p_inoc_scaffold_7583 5 5711 bp 50.11 4.83 51.74
scnpilot_p_inoc_scaffold_10448 3 4558 bp 57.42 4.08 52.65
scnpilot_p_inoc_scaffold_11885 4 4149 bp 54.86 3.94 54.01
scnpilot_p_inoc_scaffold_8712 3 5169 bp 59.62 4.88 54.27
scnpilot_p_inoc_scaffold_11374 6 4277 bp 37.50 2.45 54.43
scnpilot_p_inoc_scaffold_8543 5 5234 bp 52.67 4.18 54.57
scnpilot_p_inoc_scaffold_2928 12 10980 bp 50.48 3.65 54.67
scnpilot_p_inoc_scaffold_7712 7 5648 bp 52.48 4.62 54.98
scnpilot_p_inoc_scaffold_12017 5 4119 bp 54.48 3.61 55.13
scnpilot_p_inoc_scaffold_11492 5 4246 bp 54.12 3.53 55.53
scnpilot_p_inoc_scaffold_8741 4 5159 bp 54.68 3.87 55.59
scnpilot_p_inoc_scaffold_9332 5 4919 bp 55.91 5.18 55.93
scnpilot_p_inoc_scaffold_5034 9 7557 bp 48.22 4.13 56.41
scnpilot_p_inoc_scaffold_3981
Species: Camponotus floridanus (50%)
2 8829 bp 52.11 4.25 56.78
scnpilot_p_inoc_scaffold_11701 3 4193 bp 50.04 3.36 56.95
scnpilot_p_inoc_scaffold_11571
Species: Veillonella sp. oral taxon 158 (50%)
2 4224 bp 48.30 3.05 57.03
scnpilot_p_inoc_scaffold_3791 6 9126 bp 49.80 3.93 57.17
scnpilot_p_inoc_scaffold_10435 3 4564 bp 53.22 4.01 57.32
scnpilot_p_inoc_scaffold_5668 6 6979 bp 45.89 2.84 57.39
scnpilot_p_inoc_scaffold_4879 11 9323 bp 53.02 3.86 57.60
scnpilot_p_inoc_scaffold_4395 5 8291 bp 55.28 4.07 57.97
scnpilot_p_inoc_scaffold_12303 3 4046 bp 56.60 3.82 58.13
scnpilot_p_inoc_scaffold_12123 5 4093 bp 54.73 3.92 58.27
scnpilot_p_inoc_scaffold_11984
Species: Strigamia maritima (50%)
2 4125 bp 55.10 4.44 58.62
scnpilot_p_inoc_scaffold_8529
Species: Entamoeba invadens (50%)
2 5239 bp 53.52 3.38 58.75
scnpilot_p_inoc_scaffold_12487 3 4002 bp 53.10 5.47 59.30
scnpilot_p_inoc_scaffold_4585 7 8053 bp 52.92 4.69 59.31
scnpilot_p_inoc_scaffold_4835 9 7771 bp 48.66 3.42 60.30
scnpilot_p_inoc_scaffold_8971 4 5071 bp 53.36 3.31 60.82
scnpilot_p_inoc_scaffold_14688 3 4062 bp 56.50 3.47 60.86
scnpilot_p_inoc_scaffold_14922 4 4271 bp 59.70 4.50 60.90
scnpilot_p_inoc_scaffold_7266 12 5872 bp 49.15 3.45 60.90
scnpilot_p_inoc_scaffold_7643 5 5680 bp 54.68 4.91 62.17
scnpilot_p_inoc_scaffold_7846 5 5579 bp 55.57 4.79 62.59
Displaying items 51-100 of 183 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.