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scnpilot_dereplicated_Eukaryote_unknown_15

SCNpilot_P_inoc_unknown_51_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.62 Longest contig: 48.83 Kbp Bin length: 1.07 Mbp GC content: 51.36 %
Contigs count: 183 Features count: 909 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 BSCG 2 / 51 ASCG 0 / 38

Description

not clear on coverage ESOM

Displaying items 1-50 of 183 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_10222
Species: Trachipleistophora hominis (100%)
1 4630 bp 55.62 8.23 93.76
scnpilot_p_inoc_scaffold_11049 1 4371 bp 50.24 2.61 100.00
scnpilot_p_inoc_scaffold_12104
Species: Acanthamoeba castellanii (100%)
1 4099 bp 52.21 3.70 36.67
scnpilot_p_inoc_scaffold_11838 1 4161 bp 53.35 17.56 99.93
scnpilot_p_inoc_scaffold_12231
Species: Entamoeba invadens (100%)
1 4063 bp 51.96 14.10 99.90
scnpilot_p_inoc_scaffold_7925 1 5535 bp 51.42 3.88 99.95
scnpilot_p_inoc_scaffold_7424
Species: Oncorhynchus mykiss (100%)
1 5789 bp 50.96 3.63 99.97
scnpilot_p_inoc_scaffold_10395
Species: Lachancea thermotolerans (100%)
1 4576 bp 49.52 4.03 66.48
scnpilot_p_inoc_scaffold_2704 1 11737 bp 49.49 3.69 99.99
scnpilot_p_inoc_scaffold_9246
Species: Capsaspora owczarzaki (100%)
1 4960 bp 55.00 4.39 45.30
scnpilot_p_inoc_scaffold_7760 1 5624 bp 56.13 4.11 99.96
scnpilot_p_inoc_scaffold_11033
Species: Phytophthora parasitica (50%)
2 4376 bp 52.38 4.87 32.84
scnpilot_p_inoc_scaffold_11571
Species: Veillonella sp. oral taxon 158 (50%)
2 4224 bp 48.30 3.05 57.03
scnpilot_p_inoc_scaffold_9041
Species: CG_Delta_07 (50%)
2 5044 bp 55.87 4.16 51.69
scnpilot_p_inoc_scaffold_10764 2 4450 bp 52.34 4.38 99.78
scnpilot_p_inoc_scaffold_12130
Species: Strongylocentrotus purpuratus (50%)
2 4091 bp 56.47 3.04 36.59
scnpilot_p_inoc_scaffold_7562
Species: Chlamydomonas reinhardtii (50%)
2 5718 bp 54.42 3.67 43.97
scnpilot_p_inoc_scaffold_10276
Species: Niabella soli (50%)
2 4616 bp 51.58 3.41 98.92
scnpilot_p_inoc_scaffold_6130 2 6598 bp 48.97 3.75 99.71
scnpilot_p_inoc_scaffold_7579
Species: Guillardia theta (50%)
2 5714 bp 54.20 4.46 50.67
scnpilot_p_inoc_scaffold_8529
Species: Entamoeba invadens (50%)
2 5239 bp 53.52 3.38 58.75
scnpilot_p_inoc_scaffold_8042
Species: Dictyostelium fasciculatum (50%)
2 5464 bp 53.40 3.95 38.76
scnpilot_p_inoc_scaffold_9376
Species: Sporothrix schenckii (50%)
2 4905 bp 51.85 3.73 42.02
scnpilot_p_inoc_scaffold_10329
Species: Capsaspora owczarzaki (50%)
2 4599 bp 53.71 4.70 45.40
scnpilot_p_inoc_scaffold_9898
Species: Lactobacillus kisonensis (50%)
2 4738 bp 60.55 3.39 65.41
scnpilot_p_inoc_scaffold_12452
Species: Rhizobium tropici (50%)
2 4014 bp 58.52 3.59 65.92
scnpilot_p_inoc_scaffold_10341
Species: Brachyspira murdochii (50%)
2 4595 bp 56.19 3.53 71.10
scnpilot_p_inoc_scaffold_12211
Species: Ruminococcus sp. 5_1_39BFAA (50%)
2 4068 bp 60.25 4.83 75.44
scnpilot_p_inoc_scaffold_11176
Species: Meyerozyma guilliermondii (50%)
2 4332 bp 49.52 4.71 28.88
scnpilot_p_inoc_scaffold_9931
Species: CG_Delta_07 (50%)
2 4726 bp 54.08 2.79 94.01
scnpilot_p_inoc_scaffold_11984
Species: Strigamia maritima (50%)
2 4125 bp 55.10 4.44 58.62
scnpilot_p_inoc_scaffold_8377
Species: Galdieria sulphuraria (50%)
2 5312 bp 59.96 4.41 79.69
scnpilot_p_inoc_scaffold_9961
Species: Phytophthora parasitica (50%)
2 4715 bp 52.73 4.33 35.06
scnpilot_p_inoc_scaffold_10139 2 4654 bp 47.61 3.87 80.00
scnpilot_p_inoc_scaffold_8897 2 5102 bp 52.82 3.70 77.50
scnpilot_p_inoc_scaffold_10708
Species: Streptococcus pneumoniae (50%)
2 4471 bp 49.90 3.46 69.98
scnpilot_p_inoc_scaffold_3981
Species: Camponotus floridanus (50%)
2 8829 bp 52.11 4.25 56.78
scnpilot_p_inoc_scaffold_8712 3 5169 bp 59.62 4.88 54.27
scnpilot_p_inoc_scaffold_8981 3 5067 bp 58.06 2.99 72.17
scnpilot_p_inoc_scaffold_9294 3 4938 bp 54.54 4.37 62.76
scnpilot_p_inoc_scaffold_10542 3 4522 bp 49.18 3.91 45.31
scnpilot_p_inoc_scaffold_8067 3 5449 bp 54.80 4.38 24.17
scnpilot_p_inoc_scaffold_9142 3 4998 bp 49.90 3.96 70.11
scnpilot_p_inoc_scaffold_7905
Genus: Streptococcus (66.67%)
3 5548 bp 51.60 4.43 69.97
scnpilot_p_inoc_scaffold_11954 3 4131 bp 49.21 4.18 21.64
scnpilot_p_inoc_scaffold_11701 3 4193 bp 50.04 3.36 56.95
scnpilot_p_inoc_scaffold_12487 3 4002 bp 53.10 5.47 59.30
scnpilot_p_inoc_scaffold_8877 3 5110 bp 55.36 3.55 46.03
scnpilot_p_inoc_scaffold_8632 3 5197 bp 52.76 3.55 74.52
scnpilot_p_inoc_scaffold_11485 3 4247 bp 54.18 3.74 64.56
Displaying items 1-50 of 183 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.