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scnpilot_dereplicated_Eukaryote_unknown_15

SCNpilot_P_inoc_unknown_51_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.62 Longest contig: 48.83 Kbp Bin length: 1.07 Mbp GC content: 51.36 %
Contigs count: 183 Features count: 909 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 BSCG 2 / 51 ASCG 0 / 38

Description

not clear on coverage ESOM

Displaying items 1-50 of 183 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_6667 6 6228 bp 44.25 3.37 15.75
scnpilot_p_inoc_scaffold_11954 3 4131 bp 49.21 4.18 21.64
scnpilot_p_inoc_scaffold_8067 3 5449 bp 54.80 4.38 24.17
scnpilot_p_inoc_scaffold_11176
Species: Meyerozyma guilliermondii (50%)
2 4332 bp 49.52 4.71 28.88
scnpilot_p_inoc_scaffold_12039 3 4115 bp 52.10 4.01 29.09
scnpilot_p_inoc_scaffold_10553
Species: Novosphingobium tardaugens (50%)
4 4519 bp 39.37 3.85 31.60
scnpilot_p_inoc_scaffold_11033
Species: Phytophthora parasitica (50%)
2 4376 bp 52.38 4.87 32.84
scnpilot_p_inoc_scaffold_6714 7 6201 bp 47.88 3.97 33.43
scnpilot_p_inoc_scaffold_5705 4 6945 bp 45.13 4.54 33.43
scnpilot_p_inoc_scaffold_9961
Species: Phytophthora parasitica (50%)
2 4715 bp 52.73 4.33 35.06
scnpilot_p_inoc_scaffold_4455 4 8211 bp 53.94 4.71 35.29
scnpilot_p_inoc_scaffold_10209 4 4635 bp 52.86 3.50 35.73
scnpilot_p_inoc_scaffold_12130
Species: Strongylocentrotus purpuratus (50%)
2 4091 bp 56.47 3.04 36.59
scnpilot_p_inoc_scaffold_12104
Species: Acanthamoeba castellanii (100%)
1 4099 bp 52.21 3.70 36.67
scnpilot_p_inoc_scaffold_11573 5 4224 bp 48.20 4.47 36.93
scnpilot_p_inoc_scaffold_3987 5 8811 bp 50.43 3.75 36.94
scnpilot_p_inoc_scaffold_10686 4 4478 bp 55.94 4.52 37.18
scnpilot_p_inoc_scaffold_8078 5 5444 bp 40.87 3.06 37.31
scnpilot_p_inoc_scaffold_7321 4 5840 bp 48.37 3.98 38.42
scnpilot_p_inoc_scaffold_8042
Species: Dictyostelium fasciculatum (50%)
2 5464 bp 53.40 3.95 38.76
scnpilot_p_inoc_scaffold_6991 5 6026 bp 48.99 3.44 38.78
scnpilot_p_inoc_scaffold_8797 6 6469 bp 50.69 3.92 39.09
scnpilot_p_inoc_scaffold_10993 4 4385 bp 46.66 4.17 39.48
scnpilot_p_inoc_scaffold_10723 4 4465 bp 51.53 3.49 39.84
scnpilot_p_inoc_scaffold_7227
Phylum: Ascomycota (66.67%)
3 5892 bp 50.93 3.67 40.07
scnpilot_p_inoc_scaffold_9773 7 4777 bp 37.70 4.02 40.38
scnpilot_p_inoc_scaffold_9590 7 4837 bp 49.58 3.26 41.68
scnpilot_p_inoc_scaffold_9376
Species: Sporothrix schenckii (50%)
2 4905 bp 51.85 3.73 42.02
scnpilot_p_inoc_scaffold_10716 3 4468 bp 50.04 4.53 42.03
scnpilot_p_inoc_scaffold_13019 5 5602 bp 50.16 4.23 42.04
scnpilot_p_inoc_scaffold_3973 7 8836 bp 43.78 3.89 42.37
scnpilot_p_inoc_scaffold_6593 7 6969 bp 45.17 4.13 42.70
scnpilot_p_inoc_scaffold_8387 4 5308 bp 53.79 4.24 42.84
scnpilot_p_inoc_scaffold_11275 4 4307 bp 52.17 3.73 42.98
scnpilot_p_inoc_scaffold_5927 5 6754 bp 52.16 3.98 43.00
scnpilot_p_inoc_scaffold_4958 7 7646 bp 53.40 4.41 43.00
scnpilot_p_inoc_scaffold_5852
Class: Neoptera (50%)
4 6819 bp 53.15 4.73 43.69
scnpilot_p_inoc_scaffold_8647 5 5191 bp 52.73 4.31 43.81
scnpilot_p_inoc_scaffold_7562
Species: Chlamydomonas reinhardtii (50%)
2 5718 bp 54.42 3.67 43.97
scnpilot_p_inoc_scaffold_13611 5 5073 bp 52.57 4.38 44.29
scnpilot_p_inoc_scaffold_9983 3 4709 bp 53.39 3.92 44.40
scnpilot_p_inoc_scaffold_10090 7 4667 bp 50.67 3.89 44.55
scnpilot_p_inoc_scaffold_10821 6 4437 bp 43.07 3.68 44.90
scnpilot_p_inoc_scaffold_11277 6 4307 bp 43.74 3.41 44.93
scnpilot_p_inoc_scaffold_7740 7 5635 bp 51.71 3.57 45.04
scnpilot_p_inoc_scaffold_5099 6 7491 bp 51.01 3.90 45.09
scnpilot_p_inoc_scaffold_9246
Species: Capsaspora owczarzaki (100%)
1 4960 bp 55.00 4.39 45.30
scnpilot_p_inoc_scaffold_10542 3 4522 bp 49.18 3.91 45.31
scnpilot_p_inoc_scaffold_10329
Species: Capsaspora owczarzaki (50%)
2 4599 bp 53.71 4.70 45.40
scnpilot_p_inoc_scaffold_8500 6 5252 bp 54.93 3.94 45.47
Displaying items 1-50 of 183 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.