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scnpilot_dereplicated_Eukaryote_unknown_15

SCNpilot_P_inoc_unknown_51_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.62 Longest contig: 48.83 Kbp Bin length: 1.07 Mbp GC content: 51.36 %
Contigs count: 183 Features count: 909 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 BSCG 2 / 51 ASCG 0 / 38

Description

not clear on coverage ESOM

Displaying items 1-50 of 183 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_695 68 48831 bp 48.83 15.47 92.63
scnpilot_p_inoc_scaffold_1619 10 18278 bp 50.57 3.80 87.38
scnpilot_p_inoc_scaffold_1877 23 15995 bp 45.43 3.43 99.18
scnpilot_p_inoc_scaffold_2704 1 11737 bp 49.49 3.69 99.99
scnpilot_p_inoc_scaffold_2928 12 10980 bp 50.48 3.65 54.67
scnpilot_p_inoc_scaffold_3872 12 10335 bp 51.42 3.86 67.46
scnpilot_p_inoc_scaffold_3497 4 9671 bp 50.46 3.66 88.94
scnpilot_p_inoc_scaffold_3649 7 9379 bp 50.60 4.03 72.64
scnpilot_p_inoc_scaffold_4879 11 9323 bp 53.02 3.86 57.60
scnpilot_p_inoc_scaffold_3791 6 9126 bp 49.80 3.93 57.17
scnpilot_p_inoc_scaffold_3973 7 8836 bp 43.78 3.89 42.37
scnpilot_p_inoc_scaffold_3981
Species: Camponotus floridanus (50%)
2 8829 bp 52.11 4.25 56.78
scnpilot_p_inoc_scaffold_3987 5 8811 bp 50.43 3.75 36.94
scnpilot_p_inoc_scaffold_4012 10 8782 bp 50.99 3.83 50.73
scnpilot_p_inoc_scaffold_4059 4 8705 bp 54.88 4.38 73.89
scnpilot_p_inoc_scaffold_4128
Class: Bacilli (66.67%)
3 8616 bp 53.95 3.85 49.76
scnpilot_p_inoc_scaffold_4364 4 8325 bp 53.14 3.68 74.27
scnpilot_p_inoc_scaffold_4368 13 8320 bp 54.80 4.87 83.33
scnpilot_p_inoc_scaffold_4395 5 8291 bp 55.28 4.07 57.97
scnpilot_p_inoc_scaffold_4455 4 8211 bp 53.94 4.71 35.29
scnpilot_p_inoc_scaffold_4585 7 8053 bp 52.92 4.69 59.31
scnpilot_p_inoc_scaffold_4835 9 7771 bp 48.66 3.42 60.30
scnpilot_p_inoc_scaffold_4859 4 7740 bp 53.33 4.65 49.96
scnpilot_p_inoc_scaffold_6904 9 7686 bp 50.20 3.51 65.65
scnpilot_p_inoc_scaffold_4958 7 7646 bp 53.40 4.41 43.00
scnpilot_p_inoc_scaffold_5034 9 7557 bp 48.22 4.13 56.41
scnpilot_p_inoc_scaffold_5099 6 7491 bp 51.01 3.90 45.09
scnpilot_p_inoc_scaffold_5668 6 6979 bp 45.89 2.84 57.39
scnpilot_p_inoc_scaffold_6593 7 6969 bp 45.17 4.13 42.70
scnpilot_p_inoc_scaffold_5705 4 6945 bp 45.13 4.54 33.43
scnpilot_p_inoc_scaffold_5836
Order: Burkholderiales (100%)
5 6830 bp 60.34 5.73 92.55
scnpilot_p_inoc_scaffold_5852
Class: Neoptera (50%)
4 6819 bp 53.15 4.73 43.69
scnpilot_p_inoc_scaffold_5874
Species: marine sediment metagenome (54.55%)
11 6800 bp 47.85 3.95 91.94
scnpilot_p_inoc_scaffold_5927 5 6754 bp 52.16 3.98 43.00
scnpilot_p_inoc_scaffold_5940 9 6738 bp 45.77 3.52 99.38
scnpilot_p_inoc_scaffold_6130 2 6598 bp 48.97 3.75 99.71
scnpilot_p_inoc_scaffold_6224 4 6527 bp 49.62 4.23 70.92
scnpilot_p_inoc_scaffold_8797 6 6469 bp 50.69 3.92 39.09
scnpilot_p_inoc_scaffold_6462
Domain: Bacteria (66.67%)
6 6357 bp 44.83 3.14 80.51
scnpilot_p_inoc_scaffold_6667 6 6228 bp 44.25 3.37 15.75
scnpilot_p_inoc_scaffold_6714 7 6201 bp 47.88 3.97 33.43
scnpilot_p_inoc_scaffold_6991 5 6026 bp 48.99 3.44 38.78
scnpilot_p_inoc_scaffold_7047
Species: GWC2_TM7_48_9 (57.14%)
7 5998 bp 47.48 3.70 95.93
scnpilot_p_inoc_scaffold_7227
Phylum: Ascomycota (66.67%)
3 5892 bp 50.93 3.67 40.07
scnpilot_p_inoc_scaffold_7266 12 5872 bp 49.15 3.45 60.90
scnpilot_p_inoc_scaffold_7321 4 5840 bp 48.37 3.98 38.42
scnpilot_p_inoc_scaffold_7424
Species: Oncorhynchus mykiss (100%)
1 5789 bp 50.96 3.63 99.97
scnpilot_p_inoc_scaffold_7441 6 5777 bp 59.51 4.54 72.96
scnpilot_p_inoc_scaffold_7514 7 5742 bp 54.70 4.10 49.37
scnpilot_p_inoc_scaffold_7562
Species: Chlamydomonas reinhardtii (50%)
2 5718 bp 54.42 3.67 43.97
Displaying items 1-50 of 183 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.