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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 701-750 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_4847 6 7758 bp 63.01 4.39 52.28
scnpilot_p_inoc_scaffold_11231
Order: Burkholderiales (66.67%)
6 4320 bp 55.02 3.23 97.08
scnpilot_p_inoc_scaffold_6255 6 6505 bp 63.81 4.43 81.95
scnpilot_p_inoc_scaffold_4594 6 8042 bp 60.61 4.31 67.67
scnpilot_p_inoc_scaffold_4850 6 7753 bp 58.42 4.68 63.92
scnpilot_p_inoc_scaffold_10666
Order: Burkholderiales (50%)
6 4485 bp 59.67 2.88 94.38
scnpilot_p_inoc_scaffold_7451 6 5774 bp 58.21 4.73 89.00
scnpilot_p_inoc_scaffold_2973 6 10838 bp 51.11 3.65 53.06
scnpilot_p_inoc_scaffold_5389 6 7226 bp 61.33 4.42 74.77
scnpilot_p_inoc_scaffold_8913 6 5096 bp 55.95 3.36 70.76
scnpilot_p_inoc_scaffold_2466 6 12647 bp 63.53 4.73 74.58
scnpilot_p_inoc_scaffold_15355 6 6131 bp 64.15 4.55 81.23
scnpilot_p_inoc_scaffold_7716 6 5647 bp 54.97 3.61 85.85
scnpilot_p_inoc_scaffold_1863 6 16074 bp 66.19 4.96 91.19
scnpilot_p_inoc_scaffold_3689 6 9305 bp 63.54 4.47 71.54
scnpilot_p_inoc_scaffold_14185 6 6528 bp 62.53 4.11 87.50
scnpilot_p_inoc_scaffold_8154
Domain: Eukaryota (66.67%)
6 5406 bp 60.17 4.97 73.70
scnpilot_p_inoc_scaffold_4355 6 8339 bp 52.46 4.69 67.89
scnpilot_p_inoc_scaffold_11763
Domain: Eukaryota (50%)
6 4178 bp 59.26 4.02 67.50
scnpilot_p_inoc_scaffold_3436 6 9790 bp 57.45 4.37 67.75
scnpilot_p_inoc_scaffold_11252 6 7565 bp 54.12 4.32 42.87
scnpilot_p_inoc_scaffold_5409 6 7208 bp 61.79 4.60 78.83
scnpilot_p_inoc_scaffold_5666 6 6982 bp 61.89 4.55 75.19
scnpilot_p_inoc_scaffold_9235 6 4963 bp 52.39 4.78 49.81
scnpilot_p_inoc_scaffold_3700 6 9286 bp 65.43 4.68 85.45
scnpilot_p_inoc_scaffold_9236 6 4963 bp 62.54 4.29 80.58
scnpilot_p_inoc_scaffold_5925 6 6756 bp 67.47 4.40 74.78
scnpilot_p_inoc_scaffold_10950 6 4396 bp 54.32 3.69 59.85
scnpilot_p_inoc_scaffold_5670 6 6976 bp 55.22 4.69 55.05
scnpilot_p_inoc_scaffold_3703 6 14571 bp 65.98 4.36 86.12
scnpilot_p_inoc_scaffold_11009
Domain: Metazoa (50%)
6 8460 bp 68.71 3.94 88.48
scnpilot_p_inoc_scaffold_5929 6 6752 bp 58.93 4.00 73.09
scnpilot_p_inoc_scaffold_5162 6 7435 bp 62.91 4.08 85.34
scnpilot_p_inoc_scaffold_5675 6 6967 bp 54.96 4.11 72.43
scnpilot_p_inoc_scaffold_3452 6 9770 bp 65.51 4.54 79.81
scnpilot_p_inoc_scaffold_3708 6 9276 bp 67.40 4.84 82.50
scnpilot_p_inoc_scaffold_2493 6 12537 bp 54.42 4.16 71.12
scnpilot_p_inoc_scaffold_10958 6 4394 bp 58.76 4.47 64.25
scnpilot_p_inoc_scaffold_11271 6 7172 bp 65.80 4.31 80.56
scnpilot_p_inoc_scaffold_3201 6 10297 bp 58.16 4.69 69.22
scnpilot_p_inoc_scaffold_9761 6 4778 bp 57.18 4.96 72.58
scnpilot_p_inoc_scaffold_7234 6 5887 bp 61.25 4.84 67.78
scnpilot_p_inoc_scaffold_2755 6 11576 bp 60.25 4.24 81.87
scnpilot_p_inoc_scaffold_8180 6 5396 bp 52.63 4.34 49.15
scnpilot_p_inoc_scaffold_2757 6 11564 bp 63.30 5.19 72.72
scnpilot_p_inoc_scaffold_4382
Domain: Eukaryota (50%)
6 8312 bp 55.88 4.87 85.68
scnpilot_p_inoc_scaffold_8438 6 6999 bp 63.11 4.67 85.13
scnpilot_p_inoc_scaffold_5174 6 7416 bp 58.95 4.51 79.33
scnpilot_p_inoc_scaffold_5430 6 7190 bp 64.83 4.88 71.56
scnpilot_p_inoc_scaffold_10200 6 4638 bp 52.48 3.10 50.19
Displaying items 701-750 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.