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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 751-800 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_11536 6 4235 bp 55.99 3.47 75.87
scnpilot_p_inoc_scaffold_6304 6 9130 bp 71.02 4.76 81.00
scnpilot_p_inoc_scaffold_6560 6 6287 bp 57.99 4.25 51.82
scnpilot_p_inoc_scaffold_8441 6 5277 bp 57.36 5.88 64.35
scnpilot_p_inoc_scaffold_12067
Domain: Eukaryota (50%)
6 4108 bp 58.86 3.83 59.96
scnpilot_p_inoc_scaffold_6564 6 6285 bp 59.90 3.44 67.97
scnpilot_p_inoc_scaffold_5180 6 7412 bp 57.83 4.29 70.87
scnpilot_p_inoc_scaffold_5436 6 7187 bp 59.18 5.78 65.83
scnpilot_p_inoc_scaffold_5181 6 7412 bp 62.94 4.27 73.06
scnpilot_p_inoc_scaffold_4391 6 8298 bp 64.36 5.39 81.85
scnpilot_p_inoc_scaffold_8703 6 5171 bp 56.82 3.65 82.96
scnpilot_p_inoc_scaffold_8705
Domain: Eukaryota (60%)
5 5170 bp 55.36 4.64 63.19
scnpilot_p_inoc_scaffold_2770 5 11497 bp 64.00 4.64 72.18
scnpilot_p_inoc_scaffold_10978 5 4389 bp 64.73 4.44 83.05
scnpilot_p_inoc_scaffold_8962 5 5073 bp 53.07 4.55 32.53
scnpilot_p_inoc_scaffold_3475 5 9712 bp 61.58 4.29 68.76
scnpilot_p_inoc_scaffold_2004 5 15115 bp 66.42 4.71 89.02
scnpilot_p_inoc_scaffold_4908 5 7693 bp 58.74 4.09 81.23
scnpilot_p_inoc_scaffold_3733 5 9213 bp 58.60 4.48 59.49
scnpilot_p_inoc_scaffold_3989 5 8811 bp 55.82 4.17 78.99
scnpilot_p_inoc_scaffold_12334
Domain: Bacteria (80%)
5 4037 bp 54.52 3.27 100.55
scnpilot_p_inoc_scaffold_8454 5 5271 bp 54.39 4.07 57.94
scnpilot_p_inoc_scaffold_5190 5 7405 bp 64.28 4.86 89.82
scnpilot_p_inoc_scaffold_6319 5 6456 bp 55.98 4.44 32.16
scnpilot_p_inoc_scaffold_9273 5 4949 bp 56.54 3.61 57.77
scnpilot_p_inoc_scaffold_8715 5 5169 bp 62.20 4.90 65.64
scnpilot_p_inoc_scaffold_3996 5 8801 bp 59.41 4.70 86.96
scnpilot_p_inoc_scaffold_5196 5 7400 bp 58.96 4.22 72.65
scnpilot_p_inoc_scaffold_10221 5 4631 bp 56.12 3.56 41.07
scnpilot_p_inoc_scaffold_4920
Order: Pasteurellales (60%)
5 8865 bp 63.32 3.82 74.04
scnpilot_p_inoc_scaffold_1920 5 15687 bp 63.48 4.23 85.92
scnpilot_p_inoc_scaffold_7521 5 5740 bp 63.66 4.36 73.43
scnpilot_p_inoc_scaffold_6074 5 6640 bp 56.43 4.09 66.91
scnpilot_p_inoc_scaffold_12091 5 4104 bp 64.81 4.93 82.02
scnpilot_p_inoc_scaffold_9284 5 4944 bp 59.16 4.00 63.59
scnpilot_p_inoc_scaffold_11053
Phylum: Proteobacteria (100%)
5 4371 bp 57.88 3.05 91.35
scnpilot_p_inoc_scaffold_7013 5 6015 bp 51.64 5.04 67.58
scnpilot_p_inoc_scaffold_7269 5 5871 bp 62.73 4.16 75.27
scnpilot_p_inoc_scaffold_8727 5 5165 bp 58.37 4.33 61.16
scnpilot_p_inoc_scaffold_3240
Domain: Eukaryota (60%)
5 10219 bp 65.08 4.77 92.97
scnpilot_p_inoc_scaffold_12098 5 4101 bp 57.11 3.80 58.38
scnpilot_p_inoc_scaffold_12354 5 4034 bp 52.45 3.46 75.93
scnpilot_p_inoc_scaffold_9547 5 4853 bp 61.06 5.04 73.81
scnpilot_p_inoc_scaffold_17236 5 5721 bp 62.80 4.20 83.32
scnpilot_p_inoc_scaffold_10236 5 4625 bp 59.16 4.57 83.42
scnpilot_p_inoc_scaffold_12356
Species: Pusillimonas sp. T7-7 (100%)
5 4033 bp 63.15 3.46 81.60
scnpilot_p_inoc_scaffold_5468 5 7157 bp 63.28 4.78 81.82
scnpilot_p_inoc_scaffold_7533 5 6701 bp 65.47 5.64 82.73
scnpilot_p_inoc_scaffold_4934 5 7669 bp 67.22 4.87 77.22
scnpilot_p_inoc_scaffold_3246 5 10216 bp 63.97 4.79 84.10
Displaying items 751-800 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.