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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 51-100 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_6095 11 11688 bp 60.76 4.22 65.63
scnpilot_p_inoc_scaffold_2296 11 17091 bp 62.51 4.94 73.32
scnpilot_p_inoc_scaffold_1952 11 15415 bp 60.28 4.35 73.12
scnpilot_p_inoc_scaffold_2569 11 12231 bp 63.78 4.82 78.24
scnpilot_p_inoc_scaffold_3030 11 10674 bp 53.55 4.50 48.29
scnpilot_p_inoc_scaffold_2074 11 14622 bp 56.98 4.33 79.59
scnpilot_p_inoc_scaffold_2857 11 11189 bp 58.79 3.99 59.52
scnpilot_p_inoc_scaffold_1742 11 18202 bp 57.48 4.99 72.67
scnpilot_p_inoc_scaffold_7089 11 5971 bp 56.12 3.39 43.96
scnpilot_p_inoc_scaffold_2615 11 12077 bp 62.64 4.33 81.95
scnpilot_p_inoc_scaffold_3321 11 10060 bp 60.08 4.23 73.33
scnpilot_p_inoc_scaffold_10060 11 6698 bp 67.15 5.17 84.74
scnpilot_p_inoc_scaffold_4766 11 10770 bp 60.79 4.32 77.02
scnpilot_p_inoc_scaffold_3336 11 10016 bp 56.95 4.58 57.39
scnpilot_p_inoc_scaffold_2633 11 11989 bp 54.46 4.34 73.79
scnpilot_p_inoc_scaffold_2909 11 11046 bp 56.41 4.62 54.81
scnpilot_p_inoc_scaffold_3622 11 9431 bp 54.60 4.66 57.58
scnpilot_p_inoc_scaffold_1561 11 18997 bp 64.44 5.08 79.91
scnpilot_p_inoc_scaffold_2946 11 10923 bp 57.40 4.55 66.44
scnpilot_p_inoc_scaffold_4315
Domain: Eukaryota (54.55%)
11 10625 bp 58.42 4.86 64.49
scnpilot_p_inoc_scaffold_5886 11 14705 bp 65.00 4.95 78.26
scnpilot_p_inoc_scaffold_1587 11 18683 bp 62.13 4.93 78.62
scnpilot_p_inoc_scaffold_2708 11 11730 bp 57.20 4.12 54.99
scnpilot_p_inoc_scaffold_6253 11 6508 bp 57.10 4.17 67.67
scnpilot_p_inoc_scaffold_2456 11 12687 bp 57.45 4.36 63.89
scnpilot_p_inoc_scaffold_3163 11 10358 bp 56.18 4.11 78.72
scnpilot_p_inoc_scaffold_2463 11 17157 bp 63.55 4.54 77.22
scnpilot_p_inoc_scaffold_4087 11 12431 bp 56.54 4.66 54.52
scnpilot_p_inoc_scaffold_3423 11 9813 bp 55.44 4.56 63.62
scnpilot_p_inoc_scaffold_3185 11 11029 bp 62.43 4.53 78.15
scnpilot_p_inoc_scaffold_1632 11 18190 bp 59.49 4.21 66.78
scnpilot_p_inoc_scaffold_2006 10 15100 bp 54.32 4.17 74.40
scnpilot_p_inoc_scaffold_2775 10 11489 bp 60.51 4.57 65.23
scnpilot_p_inoc_scaffold_3496 10 9672 bp 57.88 4.36 64.67
scnpilot_p_inoc_scaffold_2289 10 13407 bp 63.32 5.02 88.66
scnpilot_p_inoc_scaffold_2290 10 13399 bp 55.94 4.20 68.96
scnpilot_p_inoc_scaffold_6100 10 9298 bp 60.64 4.31 75.82
scnpilot_p_inoc_scaffold_5231 10 7365 bp 53.62 4.26 50.18
scnpilot_p_inoc_scaffold_4965 10 7633 bp 53.90 3.81 39.77
scnpilot_p_inoc_scaffold_2062 10 14688 bp 63.70 4.36 71.32
scnpilot_p_inoc_scaffold_2575 10 12212 bp 59.57 4.11 56.23
scnpilot_p_inoc_scaffold_4204 10 9603 bp 58.86 4.47 70.23
scnpilot_p_inoc_scaffold_2855 10 11192 bp 58.68 4.66 56.88
scnpilot_p_inoc_scaffold_5788 10 6884 bp 62.42 4.01 82.06
scnpilot_p_inoc_scaffold_3312 10 10088 bp 56.33 4.64 75.24
scnpilot_p_inoc_scaffold_1745 10 17068 bp 62.06 4.57 76.21
scnpilot_p_inoc_scaffold_3058 10 11333 bp 68.98 4.49 68.06
scnpilot_p_inoc_scaffold_3570 10 9545 bp 57.82 4.76 66.25
scnpilot_p_inoc_scaffold_2372 10 13008 bp 55.45 4.11 69.81
scnpilot_p_inoc_scaffold_2120 10 14326 bp 66.98 4.71 71.89
Displaying items 51-100 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.