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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 2051-2100 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_6040 5 6664 bp 62.64 4.14 65.32
scnpilot_p_inoc_scaffold_5168 5 7425 bp 58.95 4.51 73.01
scnpilot_p_inoc_scaffold_12313 5 4043 bp 60.35 4.82 69.31
scnpilot_p_inoc_scaffold_6553 5 6292 bp 66.89 4.96 85.78
scnpilot_p_inoc_scaffold_2499 5 12513 bp 56.56 4.54 78.95
scnpilot_p_inoc_scaffold_3459
Domain: Bacteria (60%)
5 9762 bp 65.12 4.67 83.68
scnpilot_p_inoc_scaffold_3715 5 9259 bp 60.51 4.55 66.39
scnpilot_p_inoc_scaffold_6043 5 6662 bp 60.09 3.99 69.17
scnpilot_p_inoc_scaffold_6811 5 6127 bp 56.98 4.19 73.54
scnpilot_p_inoc_scaffold_5428 5 7190 bp 60.47 4.44 59.29
scnpilot_p_inoc_scaffold_5684 5 6960 bp 70.09 5.30 84.70
scnpilot_p_inoc_scaffold_6301 5 6473 bp 57.15 4.96 61.59
scnpilot_p_inoc_scaffold_4383 5 8310 bp 57.98 4.60 76.21
scnpilot_p_inoc_scaffold_5689 5 6956 bp 68.11 5.05 71.38
scnpilot_p_inoc_scaffold_4898 5 7704 bp 61.47 4.17 84.66
scnpilot_p_inoc_scaffold_4643 5 7976 bp 64.62 4.19 70.00
scnpilot_p_inoc_scaffold_5179 5 7413 bp 60.14 4.49 73.94
scnpilot_p_inoc_scaffold_5435 5 7188 bp 56.25 5.05 65.99
scnpilot_p_inoc_scaffold_8188 5 5394 bp 59.81 3.17 85.37
scnpilot_p_inoc_scaffold_5949 5 6733 bp 62.07 4.48 62.69
scnpilot_p_inoc_scaffold_3214 5 10281 bp 59.48 4.41 58.86
scnpilot_p_inoc_scaffold_7247 5 5883 bp 53.46 3.60 59.41
scnpilot_p_inoc_scaffold_8448 5 5275 bp 58.60 5.46 71.89
scnpilot_p_inoc_scaffold_8960 5 7199 bp 61.70 4.46 66.01
scnpilot_p_inoc_scaffold_3728 5 9219 bp 62.24 4.86 67.62
scnpilot_p_inoc_scaffold_1394
Species: Nannochloropsis gaditana (50%)
6 21563 bp 67.97 4.92 91.16
scnpilot_p_inoc_scaffold_9269 6 4950 bp 57.17 4.94 63.64
scnpilot_p_inoc_scaffold_8456 6 5269 bp 63.12 4.36 87.40
scnpilot_p_inoc_scaffold_6577 6 6276 bp 56.21 3.54 67.45
scnpilot_p_inoc_scaffold_5449 6 7458 bp 63.21 4.59 77.88
scnpilot_p_inoc_scaffold_3229 6 10244 bp 57.73 4.16 85.37
scnpilot_p_inoc_scaffold_4150 6 8578 bp 64.29 4.91 80.09
scnpilot_p_inoc_scaffold_7262 6 5875 bp 57.19 3.96 68.37
scnpilot_p_inoc_scaffold_7518 6 5741 bp 57.76 4.76 59.99
scnpilot_p_inoc_scaffold_2015 6 15030 bp 61.35 4.62 69.30
scnpilot_p_inoc_scaffold_9024 6 5049 bp 60.41 4.22 77.66
scnpilot_p_inoc_scaffold_9536 6 4855 bp 57.90 4.54 69.64
scnpilot_p_inoc_scaffold_4668 6 7952 bp 63.58 4.51 81.79
scnpilot_p_inoc_scaffold_6333 6 6442 bp 55.50 4.52 71.25
scnpilot_p_inoc_scaffold_7528 6 8571 bp 66.96 4.97 78.12
scnpilot_p_inoc_scaffold_7274 6 5867 bp 53.59 4.27 64.48
scnpilot_p_inoc_scaffold_3243 6 10218 bp 59.10 4.62 69.91
scnpilot_p_inoc_scaffold_5467 6 10057 bp 57.65 4.85 76.28
scnpilot_p_inoc_scaffold_2285
Phylum: Chlorophyta (50%)
6 13428 bp 58.80 4.49 77.66
scnpilot_p_inoc_scaffold_1933 6 17536 bp 63.54 4.31 95.43
scnpilot_p_inoc_scaffold_6857 6 6101 bp 58.96 4.72 51.63
scnpilot_p_inoc_scaffold_7281 6 5865 bp 61.99 4.40 71.87
scnpilot_p_inoc_scaffold_1681 6 17636 bp 65.83 4.98 92.15
scnpilot_p_inoc_scaffold_11579 6 4223 bp 60.43 4.90 57.19
scnpilot_p_inoc_scaffold_2548 6 12314 bp 64.89 4.56 81.32
Displaying items 2051-2100 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.