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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 2101-2150 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_6860 6 6099 bp 58.44 4.18 65.42
scnpilot_p_inoc_scaffold_2037 6 14805 bp 62.64 5.01 79.55
scnpilot_p_inoc_scaffold_3765 6 9164 bp 55.99 4.03 66.85
scnpilot_p_inoc_scaffold_6349 6 6431 bp 62.91 4.48 67.97
scnpilot_p_inoc_scaffold_5478 6 7146 bp 53.19 5.52 67.42
scnpilot_p_inoc_scaffold_3512 6 9657 bp 57.70 4.44 62.38
scnpilot_p_inoc_scaffold_5480 6 12420 bp 62.17 4.94 71.28
scnpilot_p_inoc_scaffold_10505
Order: Burkholderiales (50%)
6 4537 bp 60.63 3.37 91.91
scnpilot_p_inoc_scaffold_12625 6 7876 bp 60.27 4.76 70.81
scnpilot_p_inoc_scaffold_1690
Domain: Eukaryota (66.67%)
6 17566 bp 66.57 4.95 86.43
scnpilot_p_inoc_scaffold_3006 6 10742 bp 65.07 4.36 94.37
scnpilot_p_inoc_scaffold_4184 6 8536 bp 63.24 4.85 74.09
scnpilot_p_inoc_scaffold_8240 6 5369 bp 63.18 4.25 89.12
scnpilot_p_inoc_scaffold_5744 6 6917 bp 60.56 4.14 85.14
scnpilot_p_inoc_scaffold_8241 6 5369 bp 48.59 3.80 39.78
scnpilot_p_inoc_scaffold_8498 6 5252 bp 63.56 3.91 86.60
scnpilot_p_inoc_scaffold_6362 6 6427 bp 58.11 4.36 70.95
scnpilot_p_inoc_scaffold_4699 6 7917 bp 58.56 4.72 68.89
scnpilot_p_inoc_scaffold_4188
Domain: Metazoa (50%)
6 11076 bp 63.52 4.39 69.56
scnpilot_p_inoc_scaffold_4700 6 7915 bp 55.78 4.13 61.36
scnpilot_p_inoc_scaffold_2053 6 14742 bp 63.55 4.54 78.71
scnpilot_p_inoc_scaffold_4701 6 7913 bp 61.71 4.51 65.74
scnpilot_p_inoc_scaffold_3525
Domain: Bacteria (50%)
6 9622 bp 70.55 4.80 88.89
scnpilot_p_inoc_scaffold_2822 6 11320 bp 60.34 4.16 80.35
scnpilot_p_inoc_scaffold_2567 6 12250 bp 62.59 4.51 77.00
scnpilot_p_inoc_scaffold_9063 6 5938 bp 62.70 4.12 79.47
scnpilot_p_inoc_scaffold_6368 6 6422 bp 60.23 4.81 56.48
scnpilot_p_inoc_scaffold_3785 6 9134 bp 61.27 4.94 73.18
scnpilot_p_inoc_scaffold_4706
Domain: Fungi (50%)
6 7902 bp 63.74 4.44 75.66
scnpilot_p_inoc_scaffold_4196 6 9058 bp 56.66 4.60 64.48
scnpilot_p_inoc_scaffold_3276 6 10831 bp 58.54 3.92 55.18
scnpilot_p_inoc_scaffold_8511 6 5247 bp 57.00 5.03 72.90
scnpilot_p_inoc_scaffold_9327
Domain: Eukaryota (50%)
6 4919 bp 59.93 4.64 68.00
scnpilot_p_inoc_scaffold_5248 6 10509 bp 59.84 4.62 75.02
scnpilot_p_inoc_scaffold_10531 6 4527 bp 57.83 3.94 73.29
scnpilot_p_inoc_scaffold_8771
Order: Burkholderiales (50%)
6 5148 bp 62.18 3.38 90.38
scnpilot_p_inoc_scaffold_3539 6 9592 bp 60.41 4.71 75.38
scnpilot_p_inoc_scaffold_9331 6 5666 bp 55.45 4.45 76.67
scnpilot_p_inoc_scaffold_6123 6 6605 bp 58.06 4.22 73.58
scnpilot_p_inoc_scaffold_4461 6 8206 bp 59.09 4.11 83.35
scnpilot_p_inoc_scaffold_2327 6 13266 bp 61.69 4.70 81.09
scnpilot_p_inoc_scaffold_5003 6 7594 bp 57.55 4.21 53.81
scnpilot_p_inoc_scaffold_11108 6 4352 bp 58.23 4.00 64.59
scnpilot_p_inoc_scaffold_3806 6 9103 bp 59.89 4.07 66.64
scnpilot_p_inoc_scaffold_8271 6 5360 bp 56.51 4.09 53.56
scnpilot_p_inoc_scaffold_6391 6 6407 bp 62.09 5.34 84.05
scnpilot_p_inoc_scaffold_7327
Genus: Burkholderia (50%)
6 5837 bp 59.29 3.39 89.99
scnpilot_p_inoc_scaffold_5008
Domain: Eukaryota (50%)
6 7588 bp 59.77 4.31 58.75
scnpilot_p_inoc_scaffold_4729 6 7877 bp 66.60 4.99 70.72
scnpilot_p_inoc_scaffold_3042 6 10653 bp 59.28 4.34 75.73
Displaying items 2101-2150 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.