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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 2151-2200 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_4477 6 8189 bp 61.75 4.65 60.85
scnpilot_p_inoc_scaffold_4226 6 8489 bp 59.01 5.00 76.79
scnpilot_p_inoc_scaffold_5274 6 7328 bp 63.44 4.32 88.67
scnpilot_p_inoc_scaffold_9868 6 4748 bp 56.82 4.04 47.70
scnpilot_p_inoc_scaffold_3053 6 10633 bp 59.90 3.98 77.25
scnpilot_p_inoc_scaffold_5533 6 7101 bp 56.63 3.82 67.05
scnpilot_p_inoc_scaffold_10302 6 4608 bp 56.84 4.75 57.81
scnpilot_p_inoc_scaffold_9870 6 4747 bp 59.62 4.39 66.29
scnpilot_p_inoc_scaffold_6662
Domain: Eukaryota (50%)
6 6230 bp 57.59 5.15 70.98
scnpilot_p_inoc_scaffold_4743 6 7870 bp 60.56 4.33 72.27
scnpilot_p_inoc_scaffold_5024 6 7566 bp 68.00 4.70 95.48
scnpilot_p_inoc_scaffold_8289 6 5351 bp 59.43 4.96 65.48
scnpilot_p_inoc_scaffold_11897 6 4146 bp 62.71 3.69 83.57
scnpilot_p_inoc_scaffold_5539 6 7095 bp 50.09 4.31 47.32
scnpilot_p_inoc_scaffold_9108 6 5013 bp 59.09 5.39 74.27
scnpilot_p_inoc_scaffold_5540 6 7094 bp 51.49 3.38 76.16
scnpilot_p_inoc_scaffold_3061 6 10607 bp 64.66 4.38 94.61
scnpilot_p_inoc_scaffold_7349 6 5828 bp 59.81 3.50 70.52
scnpilot_p_inoc_scaffold_6414 6 6392 bp 51.67 3.71 86.40
scnpilot_p_inoc_scaffold_6927 6 6058 bp 57.31 3.91 73.29
scnpilot_p_inoc_scaffold_7095 6 5966 bp 63.36 4.88 70.35
scnpilot_p_inoc_scaffold_7607
Domain: Viridiplantae (50%)
6 7712 bp 61.24 5.08 59.91
scnpilot_p_inoc_scaffold_5031 6 7563 bp 55.55 4.46 58.03
scnpilot_p_inoc_scaffold_8040 6 5464 bp 57.76 4.09 68.69
scnpilot_p_inoc_scaffold_5800 6 9494 bp 68.27 5.13 82.85
scnpilot_p_inoc_scaffold_7353 6 8437 bp 65.81 4.89 76.80
scnpilot_p_inoc_scaffold_5545
Phylum: Ascomycota (50%)
6 7086 bp 64.04 5.10 83.32
scnpilot_p_inoc_scaffold_7866 6 5568 bp 55.26 3.10 77.64
scnpilot_p_inoc_scaffold_12437 6 7423 bp 68.64 4.91 80.71
scnpilot_p_inoc_scaffold_3837 6 9040 bp 59.05 4.88 66.27
scnpilot_p_inoc_scaffold_3584
Domain: Eukaryota (50%)
6 9516 bp 62.81 4.89 73.93
scnpilot_p_inoc_scaffold_9888 6 4742 bp 60.12 5.12 54.85
scnpilot_p_inoc_scaffold_10577 6 5719 bp 60.12 4.54 72.60
scnpilot_p_inoc_scaffold_6169 6 6571 bp 61.51 4.79 74.51
scnpilot_p_inoc_scaffold_3586 6 9513 bp 56.65 3.78 52.66
scnpilot_p_inoc_scaffold_6683 6 6220 bp 54.31 4.08 52.28
scnpilot_p_inoc_scaffold_9124 6 8820 bp 66.77 5.37 79.66
scnpilot_p_inoc_scaffold_1508 6 19743 bp 64.22 4.94 93.63
scnpilot_p_inoc_scaffold_2630
Domain: Eukaryota (50%)
6 12027 bp 59.74 3.99 62.58
scnpilot_p_inoc_scaffold_7878
Species: Pusillimonas sp. T7-7 (50%)
6 5563 bp 67.82 3.13 95.40
scnpilot_p_inoc_scaffold_8823 6 5127 bp 52.41 3.66 85.37
scnpilot_p_inoc_scaffold_6176 6 6566 bp 55.13 4.25 49.39
scnpilot_p_inoc_scaffold_5304 6 7939 bp 57.05 4.86 74.59
scnpilot_p_inoc_scaffold_4257 6 11957 bp 65.00 5.02 88.89
scnpilot_p_inoc_scaffold_6689 6 6215 bp 58.29 4.78 59.61
scnpilot_p_inoc_scaffold_5305 6 7299 bp 60.94 4.95 82.86
scnpilot_p_inoc_scaffold_4258 6 8456 bp 62.31 4.91 71.95
scnpilot_p_inoc_scaffold_6434 6 6380 bp 61.22 4.63 65.08
scnpilot_p_inoc_scaffold_4003 6 8792 bp 58.37 4.18 72.71
scnpilot_p_inoc_scaffold_3339 6 10002 bp 59.05 5.05 67.97
Displaying items 2151-2200 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.