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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 2201-2250 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_6180 6 11644 bp 61.53 4.77 77.19
scnpilot_p_inoc_scaffold_3085 6 10539 bp 60.88 4.04 70.79
scnpilot_p_inoc_scaffold_5053 6 7541 bp 60.26 5.11 71.93
scnpilot_p_inoc_scaffold_7375 6 5817 bp 56.01 4.90 45.75
scnpilot_p_inoc_scaffold_7633 6 5687 bp 55.46 4.59 49.48
scnpilot_p_inoc_scaffold_8066 6 5449 bp 54.51 4.65 51.31
scnpilot_p_inoc_scaffold_3346 6 9992 bp 59.79 4.76 73.17
scnpilot_p_inoc_scaffold_5314 6 7290 bp 60.80 4.30 74.40
scnpilot_p_inoc_scaffold_6955 6 6044 bp 58.19 4.52 66.02
scnpilot_p_inoc_scaffold_11167 6 4335 bp 54.42 4.98 51.83
scnpilot_p_inoc_scaffold_10857
Species: Devosia chinhatensis (50%)
6 4425 bp 64.47 3.05 94.58
scnpilot_p_inoc_scaffold_9658 6 4814 bp 53.57 4.08 60.51
scnpilot_p_inoc_scaffold_6962
Domain: Eukaryota (50%)
6 11646 bp 65.82 4.61 73.98
scnpilot_p_inoc_scaffold_12467
Species: Pusillimonas sp. T7-7 (66.67%)
6 6276 bp 66.25 2.68 97.61
scnpilot_p_inoc_scaffold_6707 6 6205 bp 66.41 4.35 86.35
scnpilot_p_inoc_scaffold_3356 6 9964 bp 60.90 4.44 73.31
scnpilot_p_inoc_scaffold_4277 6 8426 bp 51.93 4.18 58.07
scnpilot_p_inoc_scaffold_11942
Phylum: Streptophyta (50%)
6 4133 bp 54.90 4.36 62.28
scnpilot_p_inoc_scaffold_5838 6 6829 bp 56.51 4.94 72.13
scnpilot_p_inoc_scaffold_10865 6 4423 bp 51.80 3.53 85.67
scnpilot_p_inoc_scaffold_12473
Species: Bordetella petrii (83.33%)
6 4007 bp 66.78 3.44 99.80
scnpilot_p_inoc_scaffold_3617 6 9441 bp 62.25 4.62 75.12
scnpilot_p_inoc_scaffold_5841 6 6827 bp 57.14 4.26 57.04
scnpilot_p_inoc_scaffold_5842 6 6826 bp 59.05 4.81 63.90
scnpilot_p_inoc_scaffold_4539
Phylum: Proteobacteria (50%)
6 8122 bp 62.55 4.73 72.25
scnpilot_p_inoc_scaffold_6972 6 6035 bp 60.12 4.20 56.67
scnpilot_p_inoc_scaffold_6717 6 6200 bp 62.85 4.89 70.40
scnpilot_p_inoc_scaffold_8086 6 5440 bp 53.58 4.74 52.33
scnpilot_p_inoc_scaffold_5590
Species: Rhodospirillum centenum (50%)
6 7045 bp 53.34 3.94 95.90
scnpilot_p_inoc_scaffold_4800 6 7820 bp 61.64 4.28 73.66
scnpilot_p_inoc_scaffold_12481 6 4004 bp 69.66 4.57 94.11
scnpilot_p_inoc_scaffold_4035 6 8752 bp 66.89 5.42 75.99
scnpilot_p_inoc_scaffold_7659 6 5669 bp 60.47 6.30 61.49
scnpilot_p_inoc_scaffold_9164 6 4987 bp 58.67 4.36 62.92
scnpilot_p_inoc_scaffold_6980 6 6032 bp 60.48 5.52 57.69
scnpilot_p_inoc_scaffold_5340 6 7277 bp 57.50 4.16 67.98
scnpilot_p_inoc_scaffold_5085 6 7510 bp 59.37 4.35 72.30
scnpilot_p_inoc_scaffold_1550 6 19193 bp 59.75 4.38 91.64
scnpilot_p_inoc_scaffold_3632 6 9411 bp 62.84 4.46 74.85
scnpilot_p_inoc_scaffold_9168 6 4986 bp 57.80 3.55 48.26
scnpilot_p_inoc_scaffold_4298 6 8409 bp 62.36 4.99 62.93
scnpilot_p_inoc_scaffold_4810 6 7810 bp 64.85 5.49 77.36
scnpilot_p_inoc_scaffold_8099 6 5434 bp 59.66 3.64 75.80
scnpilot_p_inoc_scaffold_4044 6 8736 bp 58.89 3.85 68.65
scnpilot_p_inoc_scaffold_8868 6 5113 bp 66.03 3.96 76.80
scnpilot_p_inoc_scaffold_4557 6 8089 bp 55.04 4.08 90.94
scnpilot_p_inoc_scaffold_9173
Species: Pusillimonas sp. T7-7 (66.67%)
6 4984 bp 65.05 3.01 91.25
scnpilot_p_inoc_scaffold_6221 6 6528 bp 59.54 4.85 69.62
scnpilot_p_inoc_scaffold_2679 6 11822 bp 63.11 4.49 86.89
scnpilot_p_inoc_scaffold_11967 6 4128 bp 58.99 4.87 69.33
Displaying items 2201-2250 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.