ggKbase home page
Advanced Search
Search Help

scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 2251-2300 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_4560 6 8086 bp 61.61 4.04 70.57
scnpilot_p_inoc_scaffold_3640
Order: Rhizobiales (50%)
6 9400 bp 65.85 4.48 85.69
scnpilot_p_inoc_scaffold_7417 6 6914 bp 61.17 4.69 74.02
scnpilot_p_inoc_scaffold_4307 6 8401 bp 54.28 3.86 58.17
scnpilot_p_inoc_scaffold_8619 6 5202 bp 55.90 5.51 57.32
scnpilot_p_inoc_scaffold_9179 6 4983 bp 62.99 4.91 81.40
scnpilot_p_inoc_scaffold_2428 6 12768 bp 63.41 4.59 83.36
scnpilot_p_inoc_scaffold_3645 6 9386 bp 64.16 4.62 73.39
scnpilot_p_inoc_scaffold_5101 6 7486 bp 57.85 4.69 79.11
scnpilot_p_inoc_scaffold_5357 6 7264 bp 63.15 4.23 75.58
scnpilot_p_inoc_scaffold_3134 6 10432 bp 65.04 4.98 86.36
scnpilot_p_inoc_scaffold_6487 6 6343 bp 65.30 5.25 92.46
scnpilot_p_inoc_scaffold_5106
Domain: Metazoa (50%)
6 7483 bp 58.47 4.49 70.20
scnpilot_p_inoc_scaffold_2436 6 12759 bp 65.09 4.36 69.81
scnpilot_p_inoc_scaffold_1829 6 16345 bp 58.81 4.88 62.81
scnpilot_p_inoc_scaffold_6751
Domain: Eukaryota (66.67%)
6 6173 bp 54.38 4.40 59.73
scnpilot_p_inoc_scaffold_2696 6 11762 bp 61.81 4.40 78.18
scnpilot_p_inoc_scaffold_3146 6 10406 bp 58.25 4.70 46.21
scnpilot_p_inoc_scaffold_3915 6 8924 bp 62.73 4.20 72.04
scnpilot_p_inoc_scaffold_2447 6 12730 bp 63.40 4.25 83.31
scnpilot_p_inoc_scaffold_8384 6 5309 bp 52.02 3.45 60.07
scnpilot_p_inoc_scaffold_3152 6 10401 bp 56.98 3.97 78.71
scnpilot_p_inoc_scaffold_11226 6 4322 bp 55.14 4.16 73.30
scnpilot_p_inoc_scaffold_16035 6 6231 bp 61.56 5.63 79.15
scnpilot_p_inoc_scaffold_3923 6 8914 bp 65.76 5.79 71.05
scnpilot_p_inoc_scaffold_2964 6 10872 bp 57.74 4.72 64.16
scnpilot_p_inoc_scaffold_5124 6 7475 bp 63.68 4.49 73.24
scnpilot_p_inoc_scaffold_2709
Phylum: Chordata (50%)
6 11726 bp 55.36 3.85 81.51
scnpilot_p_inoc_scaffold_6765 6 6164 bp 58.18 4.06 75.15
scnpilot_p_inoc_scaffold_3414 6 9824 bp 55.21 4.63 85.72
scnpilot_p_inoc_scaffold_4847 6 7758 bp 63.01 4.39 52.28
scnpilot_p_inoc_scaffold_11231
Order: Burkholderiales (66.67%)
6 4320 bp 55.02 3.23 97.08
scnpilot_p_inoc_scaffold_6255 6 6505 bp 63.81 4.43 81.95
scnpilot_p_inoc_scaffold_4594 6 8042 bp 60.61 4.31 67.67
scnpilot_p_inoc_scaffold_4850 6 7753 bp 58.42 4.68 63.92
scnpilot_p_inoc_scaffold_10666
Order: Burkholderiales (50%)
6 4485 bp 59.67 2.88 94.38
scnpilot_p_inoc_scaffold_7451 6 5774 bp 58.21 4.73 89.00
scnpilot_p_inoc_scaffold_2973 6 10838 bp 51.11 3.65 53.06
scnpilot_p_inoc_scaffold_5389 6 7226 bp 61.33 4.42 74.77
scnpilot_p_inoc_scaffold_8913 6 5096 bp 55.95 3.36 70.76
scnpilot_p_inoc_scaffold_2466 6 12647 bp 63.53 4.73 74.58
scnpilot_p_inoc_scaffold_15355 6 6131 bp 64.15 4.55 81.23
scnpilot_p_inoc_scaffold_7716 6 5647 bp 54.97 3.61 85.85
scnpilot_p_inoc_scaffold_1863 6 16074 bp 66.19 4.96 91.19
scnpilot_p_inoc_scaffold_3689 6 9305 bp 63.54 4.47 71.54
scnpilot_p_inoc_scaffold_14185 6 6528 bp 62.53 4.11 87.50
scnpilot_p_inoc_scaffold_8154
Domain: Eukaryota (66.67%)
6 5406 bp 60.17 4.97 73.70
scnpilot_p_inoc_scaffold_4355 6 8339 bp 52.46 4.69 67.89
scnpilot_p_inoc_scaffold_11763
Domain: Eukaryota (50%)
6 4178 bp 59.26 4.02 67.50
scnpilot_p_inoc_scaffold_3436 6 9790 bp 57.45 4.37 67.75
Displaying items 2251-2300 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.