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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 2301-2350 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_11252 6 7565 bp 54.12 4.32 42.87
scnpilot_p_inoc_scaffold_5409 6 7208 bp 61.79 4.60 78.83
scnpilot_p_inoc_scaffold_5666 6 6982 bp 61.89 4.55 75.19
scnpilot_p_inoc_scaffold_9235 6 4963 bp 52.39 4.78 49.81
scnpilot_p_inoc_scaffold_3700 6 9286 bp 65.43 4.68 85.45
scnpilot_p_inoc_scaffold_9236 6 4963 bp 62.54 4.29 80.58
scnpilot_p_inoc_scaffold_5925 6 6756 bp 67.47 4.40 74.78
scnpilot_p_inoc_scaffold_10950 6 4396 bp 54.32 3.69 59.85
scnpilot_p_inoc_scaffold_5670 6 6976 bp 55.22 4.69 55.05
scnpilot_p_inoc_scaffold_3703 6 14571 bp 65.98 4.36 86.12
scnpilot_p_inoc_scaffold_11009
Domain: Metazoa (50%)
6 8460 bp 68.71 3.94 88.48
scnpilot_p_inoc_scaffold_5929 6 6752 bp 58.93 4.00 73.09
scnpilot_p_inoc_scaffold_5162 6 7435 bp 62.91 4.08 85.34
scnpilot_p_inoc_scaffold_5675 6 6967 bp 54.96 4.11 72.43
scnpilot_p_inoc_scaffold_3452 6 9770 bp 65.51 4.54 79.81
scnpilot_p_inoc_scaffold_3708 6 9276 bp 67.40 4.84 82.50
scnpilot_p_inoc_scaffold_2493 6 12537 bp 54.42 4.16 71.12
scnpilot_p_inoc_scaffold_10958 6 4394 bp 58.76 4.47 64.25
scnpilot_p_inoc_scaffold_11271 6 7172 bp 65.80 4.31 80.56
scnpilot_p_inoc_scaffold_3201 6 10297 bp 58.16 4.69 69.22
scnpilot_p_inoc_scaffold_9761 6 4778 bp 57.18 4.96 72.58
scnpilot_p_inoc_scaffold_7234 6 5887 bp 61.25 4.84 67.78
scnpilot_p_inoc_scaffold_2755 6 11576 bp 60.25 4.24 81.87
scnpilot_p_inoc_scaffold_8180 6 5396 bp 52.63 4.34 49.15
scnpilot_p_inoc_scaffold_2757 6 11564 bp 63.30 5.19 72.72
scnpilot_p_inoc_scaffold_4382
Domain: Eukaryota (50%)
6 8312 bp 55.88 4.87 85.68
scnpilot_p_inoc_scaffold_8438 6 6999 bp 63.11 4.67 85.13
scnpilot_p_inoc_scaffold_5174 6 7416 bp 58.95 4.51 79.33
scnpilot_p_inoc_scaffold_5430 6 7190 bp 64.83 4.88 71.56
scnpilot_p_inoc_scaffold_10200 6 4638 bp 52.48 3.10 50.19
scnpilot_p_inoc_scaffold_11536 6 4235 bp 55.99 3.47 75.87
scnpilot_p_inoc_scaffold_6304 6 9130 bp 71.02 4.76 81.00
scnpilot_p_inoc_scaffold_6560 6 6287 bp 57.99 4.25 51.82
scnpilot_p_inoc_scaffold_8441 6 5277 bp 57.36 5.88 64.35
scnpilot_p_inoc_scaffold_12067
Domain: Eukaryota (50%)
6 4108 bp 58.86 3.83 59.96
scnpilot_p_inoc_scaffold_6564 6 6285 bp 59.90 3.44 67.97
scnpilot_p_inoc_scaffold_5180 6 7412 bp 57.83 4.29 70.87
scnpilot_p_inoc_scaffold_5436 6 7187 bp 59.18 5.78 65.83
scnpilot_p_inoc_scaffold_5181 6 7412 bp 62.94 4.27 73.06
scnpilot_p_inoc_scaffold_4391 6 8298 bp 64.36 5.39 81.85
scnpilot_p_inoc_scaffold_8703 6 5171 bp 56.82 3.65 82.96
scnpilot_p_inoc_scaffold_4907 7 7694 bp 57.30 4.62 56.23
scnpilot_p_inoc_scaffold_4911 7 7691 bp 61.25 4.37 72.01
scnpilot_p_inoc_scaffold_3741 7 9205 bp 59.04 4.43 52.05
scnpilot_p_inoc_scaffold_5709 7 6944 bp 61.41 4.36 77.77
scnpilot_p_inoc_scaffold_9790 7 4773 bp 52.52 4.65 67.38
scnpilot_p_inoc_scaffold_2271 7 16807 bp 66.08 5.22 78.79
scnpilot_p_inoc_scaffold_3490 7 9682 bp 60.16 4.31 87.56
scnpilot_p_inoc_scaffold_4667 7 7955 bp 59.40 4.00 63.85
scnpilot_p_inoc_scaffold_6588 7 6270 bp 61.98 4.74 77.89
Displaying items 2301-2350 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.