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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 2551-2600 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_3017 8 10711 bp 57.56 4.20 75.06
scnpilot_p_inoc_scaffold_3530 8 9615 bp 62.32 4.20 70.80
scnpilot_p_inoc_scaffold_2827 8 11295 bp 58.26 4.69 75.64
scnpilot_p_inoc_scaffold_6115 8 6608 bp 64.13 4.86 81.31
scnpilot_p_inoc_scaffold_4964 8 7635 bp 56.92 4.13 71.51
scnpilot_p_inoc_scaffold_5244 8 7355 bp 54.52 4.32 86.68
scnpilot_p_inoc_scaffold_6629
Domain: Metazoa (50%)
8 6248 bp 58.50 4.90 65.83
scnpilot_p_inoc_scaffold_2833
Domain: Bacteria (50%)
8 13611 bp 65.54 4.99 85.83
scnpilot_p_inoc_scaffold_4716 8 7889 bp 54.06 4.03 56.47
scnpilot_p_inoc_scaffold_3035 8 10662 bp 58.22 4.74 62.94
scnpilot_p_inoc_scaffold_4724 8 7879 bp 63.07 5.03 80.34
scnpilot_p_inoc_scaffold_5263 8 13129 bp 61.98 5.21 61.97
scnpilot_p_inoc_scaffold_4218 8 8498 bp 61.69 4.41 87.13
scnpilot_p_inoc_scaffold_7843
Domain: Metazoa (50%)
8 6164 bp 54.54 4.09 51.98
scnpilot_p_inoc_scaffold_2597 8 12141 bp 59.12 4.52 80.70
scnpilot_p_inoc_scaffold_4227 8 8489 bp 61.80 4.56 76.12
scnpilot_p_inoc_scaffold_6659 8 6232 bp 58.99 4.45 73.60
scnpilot_p_inoc_scaffold_2861 8 11180 bp 55.73 4.35 69.20
scnpilot_p_inoc_scaffold_2350 8 13152 bp 54.77 4.80 66.63
scnpilot_p_inoc_scaffold_9615 8 12157 bp 62.24 4.54 67.20
scnpilot_p_inoc_scaffold_4234 8 8483 bp 54.07 4.33 42.33
scnpilot_p_inoc_scaffold_3572 8 9544 bp 57.99 4.37 81.44
scnpilot_p_inoc_scaffold_5796 8 6870 bp 55.55 4.48 45.11
scnpilot_p_inoc_scaffold_4754 8 8839 bp 61.77 4.31 65.64
scnpilot_p_inoc_scaffold_2374 8 13005 bp 60.79 4.61 74.88
scnpilot_p_inoc_scaffold_3334 8 10019 bp 64.43 4.76 83.24
scnpilot_p_inoc_scaffold_4511
Domain: Eukaryota (50%)
8 9449 bp 62.00 4.49 66.74
scnpilot_p_inoc_scaffold_2632 8 12002 bp 63.16 4.74 82.19
scnpilot_p_inoc_scaffold_1771 8 16827 bp 59.16 4.43 77.57
scnpilot_p_inoc_scaffold_3340 8 9999 bp 57.98 4.70 73.09
scnpilot_p_inoc_scaffold_3596 8 9488 bp 62.91 4.54 76.26
scnpilot_p_inoc_scaffold_8829 8 8590 bp 55.01 4.33 86.96
scnpilot_p_inoc_scaffold_3597 8 9486 bp 56.85 4.85 51.87
scnpilot_p_inoc_scaffold_2894 8 11073 bp 61.95 4.82 75.51
scnpilot_p_inoc_scaffold_2385
Domain: Eukaryota (50%)
8 12970 bp 60.80 4.09 64.81
scnpilot_p_inoc_scaffold_2911 8 11035 bp 64.15 4.46 81.26
scnpilot_p_inoc_scaffold_6967 8 9680 bp 58.46 4.42 48.38
scnpilot_p_inoc_scaffold_2914 8 11026 bp 60.06 4.88 82.22
scnpilot_p_inoc_scaffold_6970 8 6035 bp 59.25 4.15 74.12
scnpilot_p_inoc_scaffold_2404 8 12868 bp 64.52 4.66 73.55
scnpilot_p_inoc_scaffold_3108 8 10482 bp 52.77 4.18 66.63
scnpilot_p_inoc_scaffold_3369 8 9942 bp 55.42 4.21 80.84
scnpilot_p_inoc_scaffold_5597 8 7036 bp 56.20 4.22 63.49
scnpilot_p_inoc_scaffold_2672 8 11848 bp 59.76 4.68 76.19
scnpilot_p_inoc_scaffold_4552 8 8095 bp 57.67 4.73 78.86
scnpilot_p_inoc_scaffold_2164 8 13998 bp 65.46 5.25 78.95
scnpilot_p_inoc_scaffold_5605 8 7028 bp 60.61 3.86 71.84
scnpilot_p_inoc_scaffold_4558 8 8089 bp 61.29 4.86 87.82
scnpilot_p_inoc_scaffold_5607
Domain: Eukaryota (50%)
8 7027 bp 55.37 4.48 47.52
scnpilot_p_inoc_scaffold_2688 8 11798 bp 56.74 3.79 76.21
Displaying items 2551-2600 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.