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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 2601-2650 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_2689 8 11786 bp 60.54 4.44 69.79
scnpilot_p_inoc_scaffold_5617 8 7020 bp 50.56 3.91 34.87
scnpilot_p_inoc_scaffold_2438 8 12759 bp 59.35 4.58 60.33
scnpilot_p_inoc_scaffold_4062 8 8703 bp 60.98 4.55 76.87
scnpilot_p_inoc_scaffold_3402 8 9870 bp 57.41 4.64 56.66
scnpilot_p_inoc_scaffold_3659 8 9357 bp 68.81 5.03 92.37
scnpilot_p_inoc_scaffold_4329 8 8370 bp 57.13 4.75 54.95
scnpilot_p_inoc_scaffold_2710 8 11720 bp 58.89 3.84 57.77
scnpilot_p_inoc_scaffold_6254 8 6506 bp 57.25 3.78 57.09
scnpilot_p_inoc_scaffold_3159 8 11112 bp 58.08 4.27 69.92
scnpilot_p_inoc_scaffold_4597 8 8037 bp 52.88 3.84 46.55
scnpilot_p_inoc_scaffold_2718 8 11699 bp 60.80 4.86 63.75
scnpilot_p_inoc_scaffold_1854 8 16145 bp 59.78 4.46 82.61
scnpilot_p_inoc_scaffold_8655 8 5188 bp 57.07 4.65 75.06
scnpilot_p_inoc_scaffold_1599 8 18491 bp 62.91 4.68 84.85
scnpilot_p_inoc_scaffold_3680 8 9318 bp 59.12 4.41 72.92
scnpilot_p_inoc_scaffold_3936 8 8892 bp 53.35 4.82 58.64
scnpilot_p_inoc_scaffold_2220 8 13716 bp 60.31 4.12 62.38
scnpilot_p_inoc_scaffold_4100 8 8653 bp 54.58 4.07 55.23
scnpilot_p_inoc_scaffold_4101 8 8653 bp 58.06 4.92 64.76
scnpilot_p_inoc_scaffold_3182 8 12453 bp 69.20 4.73 66.95
scnpilot_p_inoc_scaffold_2225 8 13696 bp 54.53 4.59 39.95
scnpilot_p_inoc_scaffold_9490 8 6162 bp 62.27 3.80 72.93
scnpilot_p_inoc_scaffold_2998
Domain: Eukaryota (50%)
8 10762 bp 53.42 4.38 58.07
scnpilot_p_inoc_scaffold_1879 8 15992 bp 59.67 4.29 79.58
scnpilot_p_inoc_scaffold_3194 8 11060 bp 64.94 4.90 83.84
scnpilot_p_inoc_scaffold_1371 8 21961 bp 59.24 4.35 90.76
scnpilot_p_inoc_scaffold_6807 8 6131 bp 61.77 5.33 76.48
scnpilot_p_inoc_scaffold_2242 8 13648 bp 62.99 4.18 68.08
scnpilot_p_inoc_scaffold_2247 8 13635 bp 56.55 4.19 56.66
scnpilot_p_inoc_scaffold_3470 8 9722 bp 57.77 4.41 47.86
scnpilot_p_inoc_scaffold_2514 9 12452 bp 67.07 4.90 85.19
scnpilot_p_inoc_scaffold_1656 9 17922 bp 55.72 4.12 67.81
scnpilot_p_inoc_scaffold_12081 9 7869 bp 61.61 4.33 70.68
scnpilot_p_inoc_scaffold_2267
Order: Anaerolineales (55.56%)
9 13521 bp 54.35 4.08 74.28
scnpilot_p_inoc_scaffold_5454 9 7175 bp 55.18 4.47 58.37
scnpilot_p_inoc_scaffold_1664 9 17849 bp 60.73 4.35 67.73
scnpilot_p_inoc_scaffold_3747
Domain: Eukaryota (77.78%)
9 9197 bp 59.63 4.57 83.67
scnpilot_p_inoc_scaffold_3236 9 10228 bp 54.82 4.44 73.27
scnpilot_p_inoc_scaffold_5206 9 7389 bp 57.80 3.57 65.21
scnpilot_p_inoc_scaffold_2792 9 14934 bp 62.60 4.68 75.21
scnpilot_p_inoc_scaffold_2794 9 11432 bp 56.11 4.17 58.00
scnpilot_p_inoc_scaffold_1935 9 15526 bp 66.15 4.71 85.85
scnpilot_p_inoc_scaffold_1936 9 15519 bp 56.41 4.26 75.82
scnpilot_p_inoc_scaffold_1432 9 20944 bp 64.72 4.57 79.60
scnpilot_p_inoc_scaffold_5482 9 13454 bp 63.16 4.38 71.09
scnpilot_p_inoc_scaffold_2556 9 12292 bp 64.67 4.54 82.35
scnpilot_p_inoc_scaffold_3518 9 9643 bp 59.46 3.84 68.85
scnpilot_p_inoc_scaffold_4442 9 8228 bp 64.97 4.45 70.44
scnpilot_p_inoc_scaffold_1699 9 17504 bp 58.27 4.13 71.38
Displaying items 2601-2650 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.