ggKbase home page

scnpilot_p_inoc_scaffold_72_curated

Search features with annotation key words

Displaying items 91-120 of 231 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_72_curated_91
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

107198..108106
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J2K5F3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL75420.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
TPR repeat-containing protein
scnpilot_p_inoc_scaffold_72_curated_92
Polaribacter irgensii, Polaribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

108173..108898
DNA (726bp) protein (242aa)
CAAX amino terminal protease family protein n=1 Tax=Polaribacter irgensii 23-P RepID=A4C304_9FLAO
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EAR11475.1}; TaxID=313594 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Polaribacter.;" source="Polaribacter irgensii 23-P.;"
scnpilot_p_inoc_scaffold_72_curated_93
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

109709..110572
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KS84_SOLCM
Strain DSM 12611 Contig08, whole genome shotgun sequence {ECO:0000313|EMBL:KIO52771.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
hypothetical protein
scnpilot_p_inoc_scaffold_72_curated_94
unknown

Not on your lists

110732..111262
DNA (531bp) protein (177aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_72_curated_95
unknown

Not on your lists

111339..112313
DNA (975bp) protein (325aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_72_curated_96
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

comp(112362..113165)
DNA (804bp) protein (268aa)
id=1948333 bin=GWE2_Bacteroidetes_40_15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
Tax=BJP_08E140C01_Bacteroidetes_41_49
scnpilot_p_inoc_scaffold_72_curated_97
unknown

Not on your lists

comp(113778..113969)
DNA (192bp) protein (64aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_72_curated_98
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

114012..114638
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CBZ5_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ81568.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_p_inoc_scaffold_72_curated_99
Chroococcales cyanobacterium CENA595, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

114683..115789
DNA (1107bp) protein (369aa)
UDP-galactopyranose mutase n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8FW17_9CYAN
UDP-galactopyranose mutase {ECO:0000313|EMBL:KJH70975.1}; TaxID=1618023 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales.;" source="Chroococcales cyanobacterium CENA595.;"
UDP-galactopyranose mutase
scnpilot_p_inoc_scaffold_72_curated_100
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

115793..116911
DNA (1119bp) protein (373aa)
UDP-galactopyranose mutase {ECO:0000313|EMBL:CDT19441.1}; EC=5.4.99.9 {ECO:0000313|EMBL:CDT19441.1};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
UDP-galactopyranose mutase; K01854 UDP-galactopyranose mutase [EC:5.4.99.9]
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P2U4_9SPHI
scnpilot_p_inoc_scaffold_72_curated_101
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

116934..118115
DNA (1182bp) protein (394aa)
Amine oxidase n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GMZ1_9BACT
Amine oxidase {ECO:0000313|EMBL:CCH55269.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
amine oxidase
scnpilot_p_inoc_scaffold_72_curated_102
unknown

Not on your lists

comp(118197..119216)
DNA (1020bp) protein (340aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_72_curated_103
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(119275..121293)
DNA (2019bp) protein (673aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B68FE9
Uncharacterized protein {ECO:0000313|EMBL:ETZ19941.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein
scnpilot_p_inoc_scaffold_72_curated_104
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(121293..121742)
DNA (450bp) protein (150aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
CMP/dCMP deaminase zinc-binding protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THI6_NIAKG
CMP/dCMP deaminase zinc-binding protein
scnpilot_p_inoc_scaffold_72_curated_105
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(121756..124989)
DNA (3234bp) protein (1078aa)
exodeoxyribonuclease V subunit gamma; K03583 exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
RecBCD enzyme subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01486};; Exonuclease V subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; Helicase/nuclease RecBCD subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Exodeoxyribonuclease V, gamma subunit n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PDT3_CHIPD
scnpilot_p_inoc_scaffold_72_curated_106
Weeksella virosa, Weeksella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(125156..125773)
DNA (618bp) protein (206aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) RepID=F0P1B2_WEEVC
nicotinamide mononucleotide transporter PnuC; K03811 nicotinamide mononucleotide transporter
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:ADX68626.1}; TaxID=865938 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Weeksella.;" source="Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC; 16016 / NCTC 11634 / CL345/78).;"
scnpilot_p_inoc_scaffold_72_curated_107
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(125792..126454)
DNA (663bp) protein (221aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1048983 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source="Anditalea andensis.;"
nth; DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (EC:3.2.2.- 4.2.99.18); K10773 endonuclease III [EC:4.2.99.18]
endonuclease III n=1 Tax=Echinicola pacifica RepID=UPI00037DC486
scnpilot_p_inoc_scaffold_72_curated_108
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(126712..127644)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KTI0_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:AKD05591.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_72_curated_109
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127649..128743)
DNA (1095bp) protein (365aa)
O-methyltransferase n=1 Tax=Cytophaga aurantiaca RepID=UPI00035F7630
Biotin synthesis protein BioC {ECO:0000313|EMBL:KIG17170.1}; TaxID=215803 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa salina.;"
type 12 methyltransferase
scnpilot_p_inoc_scaffold_72_curated_110
unknown

Not on your lists

128798..128956
DNA (159bp) protein (53aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_72_curated_111
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

128923..129489
DNA (567bp) protein (189aa)
elongation factor P n=1 Tax=Segetibacter koreensis RepID=UPI00036AC1F5
translation elongation factor P; K02356 elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_p_inoc_scaffold_72_curated_112
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

129550..130038
DNA (489bp) protein (163aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUB5_CHIPD
acetyl-CoA carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:ACU59155.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_72_curated_113
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

130191..131528
DNA (1338bp) protein (446aa)
acetyl-CoA carboxylase, biotin carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUB6_CHIPD
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:ACU59156.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_72_curated_114
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

131709..133910
DNA (2202bp) protein (734aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI000372A243
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent receptor {ECO:0000313|EMBL:ADB42492.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_72_curated_115
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

133945..134577
DNA (633bp) protein (211aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YEK9_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ30769.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
scnpilot_p_inoc_scaffold_72_curated_116
unknown

Not on your lists

134640..135137
DNA (498bp) protein (166aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_72_curated_117
unknown

Not on your lists

135148..135258
DNA (111bp) protein (37aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_72_curated_118
Flavobacterium branchiophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

135487..139527
DNA (4041bp) protein (1347aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium branchiophilum (strain FL-15) RepID=G2Z6R1_FLABF
putative adhesin
Uncharacterized protein {ECO:0000313|EMBL:CCB68903.1}; TaxID=1034807 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium branchiophilum (strain FL-15).;"
scnpilot_p_inoc_scaffold_72_curated_119
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

139775..142507
DNA (2733bp) protein (911aa)
Uncharacterized protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6RXV7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU19283.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
fibronectin type III domain-containing protein
scnpilot_p_inoc_scaffold_72_curated_120
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

142823..144130
DNA (1308bp) protein (436aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1349421 species="Bacteria; Ba
MiaB-like tRNA modifying protein YliG; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-]
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PPC5_CHIPD
Displaying items 91-120 of 231 in total

View Taxonomy