ggKbase home page

scnpilot_p_inoc_scaffold_270_curated

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_270_curated_1
GWF2_Bacteroidetes_43_63_curated, Bacteroidetes, Bacteria

Not on your lists

365..1930
DNA (1566bp) protein (522aa)
Integrase catalytic region id=3125352 bin=GWF2_Bacteroidetes_43_63 species=Chlorobium limicola genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77
integrase catalytic subunit
Tax=GWF2_Bacteroidetes_43_63_curated
scnpilot_p_inoc_scaffold_270_curated_2
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1958..2689
DNA (732bp) protein (244aa)
IstB domain protein ATP-binding protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7P9X0_CHIPD
ATP-binding protein {ECO:0000313|EMBL:KIC89042.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
IstB domain-containing protein ATP-binding protein
scnpilot_p_inoc_scaffold_270_curated_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2874..3356
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI0003713333
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97173.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_270_curated_4
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3697..4467)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QVL1_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB42843.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_270_curated_5
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4464..5198)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QUX6_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB42608.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_270_curated_6
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5243..7228)
DNA (1986bp) protein (662aa)
Oxidoreductase FAD/NAD(P)-binding domain protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QVL3_SPILD
oxidoreductase FAD/NAD(P)-binding domain protein
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:ADB42845.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_270_curated_7
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7274..8065)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QVL4_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB42846.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_270_curated_8
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8243..8701)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QVD3_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB42775.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_270_curated_9
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9247..9870)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C147_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:KEQ30922.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
hypothetical protein
scnpilot_p_inoc_scaffold_270_curated_10
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9980..10186)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI0003750946
Uncharacterized protein {ECO:0000313|EMBL:AIZ65449.1}; TaxID=1385664 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
heavy metal transport/detoxification protein
scnpilot_p_inoc_scaffold_270_curated_11
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10243..12126)
DNA (1884bp) protein (628aa)
copper-translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Lead, cadmium, zinc and mercury transporting ATPase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JRT6_9BACT
Lead, cadmium, zinc and mercury transporting ATPase {ECO:0000313|EMBL:ELR71676.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
scnpilot_p_inoc_scaffold_270_curated_12
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12834..13214
DNA (381bp) protein (127aa)
Putative transcriptional regulator n=1 Tax=Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) RepID=I3Z805_BELBD
ArsR family transcriptional regulator {ECO:0000313|EMBL:KEQ29901.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
putative transcriptional regulator
scnpilot_p_inoc_scaffold_270_curated_13
BJP_IG2102_Flavobacteriales_34_12, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13211..13828
DNA (618bp) protein (206aa)
Putative mercuric transport protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SB84_9FLAO
heavy metal transport/detoxification protein
Tax=BJP_IG2102_Flavobacteriales_34_12
scnpilot_p_inoc_scaffold_270_curated_14
Flavobacterium sp. SOK62, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

14201..15859
DNA (1659bp) protein (553aa)
Mercuric reductase {ECO:0000256|RuleBase:RU361223}; EC=1.16.1.1 {ECO:0000256|RuleBase:RU361223};; Hg(II) reductase {ECO:0000256|RuleBase:RU361223}; TaxID=797902 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. SOK62.;"
Mercuric reductase n=1 Tax=Flavobacterium sp. SOK62 RepID=T1RLH3_9FLAO
mercuric reductase
scnpilot_p_inoc_scaffold_270_curated_15
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

15903..16307
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G5R3_ECHVK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA80346.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
scnpilot_p_inoc_scaffold_270_curated_16
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16323..16592
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G668_ECHVK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA80345.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
scnpilot_p_inoc_scaffold_270_curated_17
endosymbiont of Acanthamoeba sp. UWC36, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17079..17681
DNA (603bp) protein (201aa)
resolvase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003642ACA
Transposon resolvase {ECO:0000313|EMBL:KIE04079.1}; TaxID=86105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Holosporaceae.;" source="endosymbiont of Acanthamoeba sp. UWC36.;"
Resolvase domain
scnpilot_p_inoc_scaffold_270_curated_18
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17697..20663
DNA (2967bp) protein (989aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036A9DFB
Uncharacterized protein {ECO:0000313|EMBL:ETX03626.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
putative transposase, Tn3
scnpilot_p_inoc_scaffold_270_curated_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20581..20994)
DNA (414bp) protein (138aa)
copper-translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Copper-translocating P-type ATPase {ECO:0000313|EMBL:AEV98589.1}; EC=3.6.3.4 {ECO:0000313|EMBL:AEV98589.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Copper-translocating P-type ATPase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJ56_NIAKG
scnpilot_p_inoc_scaffold_270_curated_20
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21312..23381)
DNA (2070bp) protein (690aa)
heavy metal translocating p-type atpase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000378A2C0
ATPase {ECO:0000313|EMBL:KEQ31120.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
scnpilot_p_inoc_scaffold_270_curated_21
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23530..26166)
DNA (2637bp) protein (879aa)
Multicopper oxidase type 3 n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C153_SPHS2
multicopper oxidase type 3
Multicopper oxidase type 3 {ECO:0000313|EMBL:ADZ76864.1}; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_p_inoc_scaffold_270_curated_22
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26231..26830)
DNA (600bp) protein (200aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y2N7_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:ETZ23484.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein
scnpilot_p_inoc_scaffold_270_curated_23
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26823..28040)
DNA (1218bp) protein (406aa)
RND family efflux transporter MFP subunit n=2 Tax=Flavobacterium RepID=J1AIS4_9FLAO
RND transporter {ECO:0000313|EMBL:KEQ30925.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
RND family efflux transporter MFP subunit; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB
scnpilot_p_inoc_scaffold_270_curated_24
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28044..29369)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=2 Tax=Flavobacterium RepID=J0S287_9FLAO
Strain DSM 12611 Contig02, whole genome shotgun sequence {ECO:0000313|EMBL:KIO54620.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
hypothetical protein
scnpilot_p_inoc_scaffold_270_curated_25
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29347..30633)
DNA (1287bp) protein (429aa)
Outer membrane protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y2P0_PEDHD
Putative RND-type efflux pump outer membrane protein {ECO:0000313|EMBL:GAO45472.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
Outer membrane protein
scnpilot_p_inoc_scaffold_270_curated_26
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30584..32518)
DNA (1935bp) protein (645aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y2P1_PEDHD
Metal transporter {ECO:0000313|EMBL:ETZ23480.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
CzcA family heavy metal efflux pump; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA
scnpilot_p_inoc_scaffold_270_curated_27
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32515..33810)
DNA (1296bp) protein (432aa)
Acriflavin resistance protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C319_SPHS2
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:ADZ76871.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_p_inoc_scaffold_270_curated_28
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(33852..34517)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI00036B0227
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGA79438.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
scnpilot_p_inoc_scaffold_270_curated_29
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(34551..35096)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ER36_RUNSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI52077.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_p_inoc_scaffold_270_curated_30
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35134..36201)
DNA (1068bp) protein (356aa)
40-residue YVTN family beta-propeller repeat protein n=2 Tax=Flavobacterium RepID=A5FFE0_FLAJ1
YVTN beta-propeller repeat-containing protein
YVTN beta-propeller repeat-containing protein {ECO:0000313|EMBL:EJG02177.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
Displaying items 1-30 of 122 in total

View Taxonomy