ggKbase home page

scnpilot_p_inoc_scaffold_667_curated

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_667_curated_1
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(102..881)
DNA (780bp) protein (260aa)
putative carboxymethylenebutenolidase (EC:3.1.1.45)
Putative dienelactone hydrolase n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SKP1_9FLAO
Putative dienelactone hydrolase {ECO:0000313|EMBL:ESU27019.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
scnpilot_p_inoc_scaffold_667_curated_2
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(926..1711)
DNA (786bp) protein (262aa)
iron ABC transporter ATPase; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC transporter-like protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S5T5_9FLAO
ABC transporter-like protein {ECO:0000313|EMBL:ESU19725.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
scnpilot_p_inoc_scaffold_667_curated_3
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1729..2760)
DNA (1032bp) protein (344aa)
Transport system permease n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SQV1_9FLAO
Iron ABC transporter {ECO:0000313|EMBL:KIA87664.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
iron ABC transporter permease; K02015 iron complex transport system permease protein
scnpilot_p_inoc_scaffold_667_curated_4
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2762..3907)
DNA (1146bp) protein (382aa)
Vitamin B12 ABC transporter, B12-binding component BtuF n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SPL8_9FLAO
Vitamin B12 ABC transporter, B12-binding component BtuF {ECO:0000313|EMBL:ESU28576.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
iron ABC transporter; K02016 iron complex transport system substrate-binding protein
scnpilot_p_inoc_scaffold_667_curated_5
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4282..6108
DNA (1827bp) protein (609aa)
TonB-dependent receptor n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FNU5_FLAJ1
Strain DSM 12611 Contig06, whole genome shotgun sequence {ECO:0000313|EMBL:KIO53551.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
TonB-dependent receptor
scnpilot_p_inoc_scaffold_667_curated_6
Flavobacterium aquatile, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6114..7196
DNA (1083bp) protein (361aa)
Hypothetical lipoprotein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FNU6_FLAJ1
Uncharacterized protein {ECO:0000313|EMBL:KGD69686.1}; TaxID=1453498 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium aquatile LMG 4008.;"
hypothetical protein
scnpilot_p_inoc_scaffold_667_curated_7
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

7209..8261
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B68849
Strain DSM 12611 Contig06, whole genome shotgun sequence {ECO:0000313|EMBL:KIO53550.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
lipoprotein precursor
scnpilot_p_inoc_scaffold_667_curated_8
Cytophaga hutchinsonii, Cytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8329..9729
DNA (1401bp) protein (467aa)
Alpha-tubulin suppressor n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11WY0_CYTH3
alpha-tubulin suppressor
Alpha-tubulin suppressor {ECO:0000313|EMBL:ABG58086.1}; TaxID=269798 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Cytophaga.;" source="Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469).;"
scnpilot_p_inoc_scaffold_667_curated_9
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9741..10706
DNA (966bp) protein (322aa)
Por secretion system C-terminal sorting domain-containing protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2SLK8_9FLAO
Por secretion system C-terminal sorting domain-containing protein {ECO:0000313|EMBL:EJL66377.1}; Flags: Precursor;; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
hypothetical protein
scnpilot_p_inoc_scaffold_667_curated_10
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10857..11372
DNA (516bp) protein (172aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S013_9FLAO
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:ESU19729.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_667_curated_11
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11353..11796
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI0003664843
Uncharacterized protein {ECO:0000313|EMBL:KGO94013.1}; TaxID=1107311 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
hypothetical protein
scnpilot_p_inoc_scaffold_667_curated_12
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11828..12367
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SPE2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGO89469.1}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
hypothetical protein
scnpilot_p_inoc_scaffold_667_curated_13
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12437..12982
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SQU6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU28572.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
hypothetical protein
scnpilot_p_inoc_scaffold_667_curated_14
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13006..14166)
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI0003651750
Transmembrane protein {ECO:0000313|EMBL:KGO79356.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
transmembrane protein
scnpilot_p_inoc_scaffold_667_curated_15
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14223..14954)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI000368E191
Ferredoxin {ECO:0000313|EMBL:KGO92242.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
periplasmic protein
scnpilot_p_inoc_scaffold_667_curated_16
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15027..17402)
DNA (2376bp) protein (792aa)
Putative TonB-dependent receptor n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SQZ5_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIX22495.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_scaffold_667_curated_17
Flavobacterium aquatile, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17765..18664)
DNA (900bp) protein (300aa)
Transcriptional regulator, MerR family protein n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J112_9FLAO
MerR family transcriptional regulator {ECO:0000313|EMBL:KGD69695.1}; TaxID=1453498 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium aquatile LMG 4008.;"
MerR family transcriptional regulator
scnpilot_p_inoc_scaffold_667_curated_18
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18844..19917)
DNA (1074bp) protein (358aa)
Beta-lactamase n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8ULW7_9FLAO
Contig28, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77900.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
beta-lactamase
scnpilot_p_inoc_scaffold_667_curated_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20369..21184
DNA (816bp) protein (272aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8H9_NIAKG
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEW00151.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_667_curated_20
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21225..21662
DNA (438bp) protein (146aa)
Putative signal peptide protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IAZ7_BEII9
putative signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:ACB93697.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
scnpilot_p_inoc_scaffold_667_curated_21
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21797..22459
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HRG0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ58047.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
hypothetical protein
scnpilot_p_inoc_scaffold_667_curated_22
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22589..23500
DNA (912bp) protein (304aa)
Transcriptional regulator, AraC family n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L0E2_HALH1
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AEE48454.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
scnpilot_p_inoc_scaffold_667_curated_23
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23556..24845)
DNA (1290bp) protein (430aa)
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EKS3_9SPHI
PAS/PAC sensor signal transduction histidine kinase {ECO:0000313|EMBL:EDM33936.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
pas/pac sensor protein
scnpilot_p_inoc_scaffold_667_curated_24
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25516..27396
DNA (1881bp) protein (627aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
PAS domain S-box protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G582_9SPHI
histidine kinase sensor protein rbh
scnpilot_p_inoc_scaffold_667_curated_25
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27420..27851
DNA (432bp) protein (144aa)
Response regulator receiver domain protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VKG5_9SPHI
Response regulator receiver domain protein {ECO:0000313|EMBL:EFK58767.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
response regulator receiver protein
scnpilot_p_inoc_scaffold_667_curated_26
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

28676..29194
DNA (519bp) protein (173aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
aroK; shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SPL0_9FLAO
scnpilot_p_inoc_scaffold_667_curated_27
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29186..29680)
DNA (495bp) protein (165aa)
phosphoribosyltransferase; K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
Phosphoribosyltransferase n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6RYB2_9FLAO
Phosphoribosyltransferase {ECO:0000313|EMBL:ESU19438.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
scnpilot_p_inoc_scaffold_667_curated_28
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29697..30284)
DNA (588bp) protein (196aa)
tpm; thiopurine S-methyltransferase (EC:2.1.1.67)
Thiopurine S-methyltransferase n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J109_9FLAO
SAM-dependent methlyltransferase {ECO:0000313|EMBL:KGO94019.1}; TaxID=1107311 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
scnpilot_p_inoc_scaffold_667_curated_29
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30265..30657)
DNA (393bp) protein (131aa)
Heat shock protein Hsp15 n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SKR8_9FLAO
Heat shock protein Hsp15 {ECO:0000313|EMBL:ESU27044.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
RNA-binding S4 domain-containing protein; K04762 ribosome-associated heat shock protein Hsp15
scnpilot_p_inoc_scaffold_667_curated_30
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

30738..31661
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S4W6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU19440.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
lipoprotein precursor
Displaying items 1-30 of 49 in total

View Taxonomy