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scnpilot_p_inoc_scaffold_1393_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1393_curated_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..125
DNA (123bp) protein (41aa)
Electron transfer flavoprotein alpha subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MMI9_9BURK
Electron transfer flavoprotein alpha subunit {ECO:0000313|EMBL:EIK90429.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit
scnpilot_p_inoc_scaffold_1393_curated_2
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140..892
DNA (753bp) protein (251aa)
NAD(P)H quinone oxidoreductase (EC:1.10.99.2); K00355 NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
NAD(P)H quinone oxidoreductase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGD1_9BURK
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_1393_curated_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(929..1804)
DNA (876bp) protein (292aa)
acyl-CoA thioesterase; K10805 acyl-CoA thioesterase II [EC:3.1.2.-]
Acyl-CoA thioesterase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGD0_9BURK
Acyl-CoA thioesterase {ECO:0000313|EMBL:EIK88270.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
scnpilot_p_inoc_scaffold_1393_curated_4
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2049..2963
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNV5_9BURK
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:EIK90895.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_1393_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2994..3995)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKI2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK89722.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
tctC; extracytoplasmic binding receptor
scnpilot_p_inoc_scaffold_1393_curated_6
Comamonas sp. 7D-2, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3992..5746)
DNA (1755bp) protein (585aa)
acetohydroxy-acid synthase small subunit; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Uncharacterized protein n=1 Tax=Comamonas sp. 7D-2 RepID=M9UWU0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:AGJ70620.1}; TaxID=1232667 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas sp. 7D-2.;"
scnpilot_p_inoc_scaffold_1393_curated_7
Comamonas sp. 7D-2, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5743..7224)
DNA (1482bp) protein (494aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Uncharacterized protein n=1 Tax=Comamonas sp. 7D-2 RepID=M9UX03_9BURK
Uncharacterized protein {ECO:0000313|EMBL:AGJ70621.1}; TaxID=1232667 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas sp. 7D-2.;"
scnpilot_p_inoc_scaffold_1393_curated_8
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7239..8318)
DNA (1080bp) protein (360aa)
OmpC family outer membrane porin n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKI0_9BURK
OmpC family outer membrane porin {ECO:0000313|EMBL:EIK89720.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
OmpC family outer membrane porin
scnpilot_p_inoc_scaffold_1393_curated_9
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8386..11601)
DNA (3216bp) protein (1072aa)
Reductive dehalogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKI1_9BURK
Reductive dehalogenase {ECO:0000313|EMBL:EIK89721.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein
scnpilot_p_inoc_scaffold_1393_curated_10
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11655..12674)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKI2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK89722.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
tctC; extracytoplasmic binding receptor
scnpilot_p_inoc_scaffold_1393_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12719..13582)
DNA (864bp) protein (288aa)
Protocatechuate 4,5-dioxygenase, beta chain {ECO:0000313|EMBL:EIK89723.1}; EC=1.13.11.8 {ECO:0000313|EMBL:EIK89723.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
protocatechuate 4,5-dioxygenase (EC:1.13.11.8); K04101 protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
Protocatechuate 4,5-dioxygenase, beta chain n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKI3_9BURK
scnpilot_p_inoc_scaffold_1393_curated_12
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13575..13988)
DNA (414bp) protein (138aa)
Protocatechuate-alpha chain {ECO:0000313|EMBL:EIK89724.1}; EC=1.13.11.8 {ECO:0000313|EMBL:EIK89724.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Protocatechuate-alpha chain n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKI4_9BURK
ligA; protocatechuate 4,5-dioxygenase, subunit alpha
scnpilot_p_inoc_scaffold_1393_curated_13
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13985..15166)
DNA (1182bp) protein (394aa)
4-hydroxybenzoate 3-monooxygenase {ECO:0000313|EMBL:EIK89725.1}; EC=1.14.13.2 {ECO:0000313|EMBL:EIK89725.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
4-hydroxybenzoate 3-monooxygenase; K00481 p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
4-hydroxybenzoate 3-monooxygenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKI5_9BURK
scnpilot_p_inoc_scaffold_1393_curated_14
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15312..15911)
DNA (600bp) protein (200aa)
Transcription regulator tetR family protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGE1_9BURK
Transcription regulator tetR family protein {ECO:0000313|EMBL:EIK88281.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
HTH-type transcriptional regulator betI
scnpilot_p_inoc_scaffold_1393_curated_15
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16030..17244
DNA (1215bp) protein (405aa)
Major facilitator superfamily protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGE2_9BURK
Major facilitator superfamily protein {ECO:0000313|EMBL:EIK88282.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Arabinose efflux permease
scnpilot_p_inoc_scaffold_1393_curated_16
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17258..18157)
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U7J8_METS4
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACA16220.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_p_inoc_scaffold_1393_curated_17
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18386..19186
DNA (801bp) protein (267aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Rhizobium sp. CF142 RepID=J2L4Y7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ32504.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
family 3 extracellular solute-binding protein; K02030 polar amino acid transport system substrate-binding protein
scnpilot_p_inoc_scaffold_1393_curated_18
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19323..20582
DNA (1260bp) protein (420aa)
RuBisCO-like protein; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
ribulose bisphosphate carboxylase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000152E5D0
RuBisCO-like protein {ECO:0000313|EMBL:EJZ32505.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
scnpilot_p_inoc_scaffold_1393_curated_19
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20579..21469
DNA (891bp) protein (297aa)
Type III effector Hrp-dependent outers n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IMG4_METNO
Type III effector {ECO:0000313|EMBL:KFG68898.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
type III effector Hrp-dependent protein
Displaying 19 items

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