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scnpilot_p_inoc_scaffold_310_curated

Search features with annotation key words

Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_310_curated_1
unknown

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1..102
DNA (102bp) protein (34aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_310_curated_2
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(272..2785)
DNA (2514bp) protein (838aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5J9_PALPW
Uncharacterized protein {ECO:0000313|EMBL:ADQ79993.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
hypothetical protein
scnpilot_p_inoc_scaffold_310_curated_3
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2835..3989)
DNA (1155bp) protein (385aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7N8_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80732.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4142..5005
DNA (864bp) protein (288aa)
Response regulator receiver protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7N9_PALPW
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ADQ80733.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_5
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5009..5773
DNA (765bp) protein (255aa)
Patatin n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7P0_PALPW
patatin; K07001 NTE family protein
Patatin {ECO:0000313|EMBL:ADQ80734.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_6
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5852..6748
DNA (897bp) protein (299aa)
LytTr DNA-binding domain protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5CZ84_BACPM
Response regulator of the LytR/AlgR family
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_7
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6745..8862
DNA (2118bp) protein (706aa)
Cell surface protein id=4613965 bin=GWF2_Lentisphaerae_49_21 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_8
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8958..9197
DNA (240bp) protein (80aa)
Putative uncharacterized protein id=3541378 bin=GWF2_Bacteroidetes_41_31 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_9
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9210..10253
DNA (1044bp) protein (348aa)
Putative uncharacterized protein id=2708753 bin=GWA2_Bacteroidetes_A19_40_15 species=Mariniradius saccharolyticus genus=Mariniradius taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_A19_40_15 organism_group=Bacteroidetes
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_10
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10266..11621
DNA (1356bp) protein (452aa)
Orn/DAP/Arg decarboxylase 2; K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
Orn/DAP/Arg decarboxylase 2 id=4722534 bin=GWC2_Bacteroidetes_40_22 species=Mariniradius saccharolyticus genus=Mariniradius taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_11
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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11618..13825
DNA (2208bp) protein (736aa)
Putative urea transporter id=4722535 bin=GWC2_Bacteroidetes_40_22 species=Mariniradius saccharolyticus genus=Mariniradius taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
Peptidase M23
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_12
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13806..15014
DNA (1209bp) protein (403aa)
id=4722536 bin=GWC2_Bacteroidetes_40_22 species=Mariniradius saccharolyticus genus=Mariniradius taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_13
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15002..15619
DNA (618bp) protein (206aa)
tetratricopeptide domain-containing protein id=3041140 bin=GWF2_Bacteroidetes_41_9 species=Pedobacter agri genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
tetratricopeptide domain-containing protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15770..16963
DNA (1194bp) protein (398aa)
aminotransferase class i and ii (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1]
Aminotransferase class I and II {ECO:0000313|EMBL:ADQ80735.1}; EC=2.6.1.1 {ECO:0000313|EMBL:ADQ80735.1};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Aminotransferase class I and II n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7P1_PALPW
scnpilot_p_inoc_scaffold_310_curated_15
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

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17133..18503
DNA (1371bp) protein (457aa)
Two-component system sensor histidine kinase id=1933521 bin=GWB2_Bacteroidetes_32_14 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47
hypothetical protein
Tax=GWD2_Bacteroidetes_33_33_curated
scnpilot_p_inoc_scaffold_310_curated_16
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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18500..19135
DNA (636bp) protein (212aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO29899.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
Cobalamin B12-binding domain protein id=1773147 bin=GWE2_Bacteroidetes_40_15 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
cobalamin B12-binding domain-containing protein
scnpilot_p_inoc_scaffold_310_curated_17
unknown

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comp(19123..19233)
DNA (111bp) protein (37aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_310_curated_18
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19259..20419
DNA (1161bp) protein (387aa)
GAF sensor signal transduction histidine kinase (EC:2.7.13.3)
Hypothetical sensory transduction histidine kinase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EBQ8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAO29897.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
scnpilot_p_inoc_scaffold_310_curated_19
BJP_IG2102_Bacteroidetes_40_9, Bacteroidetes, Bacteria

Not on your lists

20453..21553
DNA (1101bp) protein (367aa)
Multi-sensor signal transduction histidine kinase id=1788406 bin=GWD2_Bacteroidetes_33_33 species=Oscillatoria nigro-viridis genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
two component response regulator sensor histidine kinase subunit
Tax=BJP_IG2102_Bacteroidetes_40_9
scnpilot_p_inoc_scaffold_310_curated_20
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21550..21921
DNA (372bp) protein (124aa)
Sporulation initiation phosphotransferase F {ECO:0000313|EMBL:GAF04282.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans DSM 9555 = JCM 21142.;"
Response regulator receiver domain protein id=2059188 bin=GWD2_Bacteroidetes_33_33 species=Leptospira meyeri genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
putative two-component response regulator
scnpilot_p_inoc_scaffold_310_curated_21
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(22000..22485)
DNA (486bp) protein (162aa)
50S ribosomal protein L17 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7C3_PALPW
LSU ribosomal protein l17p; K02879 large subunit ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_22
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22491..23483)
DNA (993bp) protein (331aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7C2_PALPW
scnpilot_p_inoc_scaffold_310_curated_23
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(23492..24100)
DNA (609bp) protein (203aa)
30S ribosomal protein S4 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7C1_PALPW
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_24
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(24178..24567)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7C0_PALPW
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_25
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(24615..24995)
DNA (381bp) protein (127aa)
30S ribosomal protein S13 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7B9_PALPW
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_26
Porphyromonas asaccharolytica, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25025..25141)
DNA (117bp) protein (39aa)
50S ribosomal protein L36 n=3 Tax=Porphyromonas RepID=F4KMP9_PORAD
50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=879243 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas asaccharolytica (strain ATCC 25260 / DSM 20707 / VPI; 4198) (Bacteroides asaccharolyticus).;"
scnpilot_p_inoc_scaffold_310_curated_27
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25170..25388)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 id=4124788 bin=GWF2_Bacteroidetes_40_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
bacterial translation initiation factor 1 (bif-1); K02518 translation initiation factor IF-1
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_28
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25398..26177)
DNA (780bp) protein (260aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Methionine aminopeptidase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7B6_PALPW
scnpilot_p_inoc_scaffold_310_curated_29
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(26190..27533)
DNA (1344bp) protein (448aa)
Protein translocase subunit SecY n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7B5_PALPW
protein translocase subunit secy/sec61 alpha; K03076 preprotein translocase subunit SecY
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_30
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(27578..28024)
DNA (447bp) protein (149aa)
50S ribosomal protein L15 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7B4_PALPW
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
Tax=CG_Paludi_01
Displaying items 1-30 of 113 in total

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