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scnpilot_p_inoc_scaffold_310_curated

Search features with annotation key words

Displaying items 61-90 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_310_curated_61
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(48326..49399)
DNA (1074bp) protein (358aa)
mannose-1-phosphate guanylyltransferase (gdp) (EC:2.7.7.13 2.7.7.22); K00971 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
Mannose-1-phosphate guanylyltransferase (GDP) n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T572_PALPW
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_62
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(49545..53837)
DNA (4293bp) protein (1431aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T571_PALPW
scnpilot_p_inoc_scaffold_310_curated_63
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(53861..57673)
DNA (3813bp) protein (1271aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T570_PALPW
scnpilot_p_inoc_scaffold_310_curated_64
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(57815..58192)
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T569_PALPW
LSU ribosomal protein l12p; K02935 large subunit ribosomal protein L7/L12
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_65
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(58237..58758)
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T568_PALPW
LSU ribosomal protein l10p; K02864 large subunit ribosomal protein L10
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_66
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(58771..59466)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T567_PALPW
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_67
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(59481..59924)
DNA (444bp) protein (148aa)
50S ribosomal protein L11 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T566_PALPW
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_68
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(59980..60528)
DNA (549bp) protein (183aa)
Transcription termination/antitermination protein NusG n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T565_PALPW
transcription antitermination protein nusg; K02601 transcriptional antiterminator NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_69
unknown

Not on your lists

60582..60731
DNA (150bp) protein (50aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_310_curated_70
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(60901..62088)
DNA (1188bp) protein (396aa)
Elongation factor Tu n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T563_PALPW
translation elongation factor 1a (ef-1a/ef-tu); K02358 elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_71
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(62682..62981)
DNA (300bp) protein (100aa)
Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T562_PALPW
sigma 54 modulation protein/ribosomal protein s30ea; K05808 putative sigma-54 modulation protein
Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:ADQ79856.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_72
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(62996..63877)
DNA (882bp) protein (294aa)
Tyrosine recombinase XerC n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T561_PALPW
integrase family protein; K03733 integrase/recombinase XerC
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_73
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(63960..64151)
DNA (192bp) protein (64aa)
30S ribosomal protein S21 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T560_PALPW
SSU ribosomal protein s21p; K02970 small subunit ribosomal protein S21
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_74
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

64362..65495
DNA (1134bp) protein (378aa)
carboxynorspermidine decarboxylase (EC:4.1.1.-); K13747 carboxynorspermidine decarboxylase [EC:4.1.1.-]
Carboxynorspermidine decarboxylase {ECO:0000313|EMBL:ADQ80952.1}; EC=4.1.1.- {ECO:0000313|EMBL:ADQ80952.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Carboxynorspermidine decarboxylase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8A8_PALPW
scnpilot_p_inoc_scaffold_310_curated_75
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(65496..67397)
DNA (1902bp) protein (634aa)
ATP-dependent DNA helicase recq (EC:3.6.1.-); K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:ADQ80953.1}; EC=3.6.1.- {ECO:0000313|EMBL:ADQ80953.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
ATP-dependent DNA helicase RecQ n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8A9_PALPW
scnpilot_p_inoc_scaffold_310_curated_76
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(67399..69468)
DNA (2070bp) protein (690aa)
amp-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-dependent synthetase and ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T741_PALPW
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_77
unknown

Not on your lists

70474..71616
DNA (1143bp) protein (381aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_310_curated_78
unknown

Not on your lists

71570..72016
DNA (447bp) protein (149aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_310_curated_79
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(72271..72450)
DNA (180bp) protein (60aa)
2Fe-2S iron-sulfur cluster-binding domain protein id=2120351 bin=GWE2_Bacteroidetes_40_15 species=Porphyromonas gingivalis genus=Porphyromonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_310_curated_80
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

72616..74229
DNA (1614bp) protein (538aa)
Peptidase S8 and S53 subtilisin kexin sedolisin n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8B6_PALPW
peptidase s8 and s53 subtilisin kexin sedolisin
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:ADQ80960.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_81
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

74234..75484
DNA (1251bp) protein (417aa)
exonuclease vii, large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 large subunit {ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|SAAS:SAAS00195506};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Exonuclease VII, large subunit n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8B7_PALPW
scnpilot_p_inoc_scaffold_310_curated_82
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

75481..76449
DNA (969bp) protein (323aa)
Glycosyltransferase 28 domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6M9_PALPW
glycosyltransferase 28 domain protein
Glycosyltransferase 28 domain protein {ECO:0000313|EMBL:ADQ80373.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_83
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(76464..77435)
DNA (972bp) protein (324aa)
Dentin sialophosphoprotein n=1 Tax=Bacteroidetes oral taxon 274 str. F0058 RepID=D7JDI3_9BACT
hypothetical protein
Tax=GWB2_Bacteroidetes_41_8_curated
scnpilot_p_inoc_scaffold_310_curated_84
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

77548..78069
DNA (522bp) protein (174aa)
Colicin V production protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6N2_PALPW
colicin v production protein; K03558 membrane protein required for colicin V production
Colicin V production protein {ECO:0000313|EMBL:ADQ80376.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_85
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

78035..78610
DNA (576bp) protein (192aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
RNAse hii (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4]
Ribonuclease HII n=2 Tax=Bacteroides RepID=A5ZKN1_9BACE
scnpilot_p_inoc_scaffold_310_curated_86
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(78607..80883)
DNA (2277bp) protein (759aa)
Surface antigen (D15) n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6N4_PALPW
surface antigen (d15)
Surface antigen (D15) {ECO:0000313|EMBL:ADQ80378.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_87
Bacteroides coprophilus CAG:333, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

80989..81741
DNA (753bp) protein (251aa)
RNA methyltransferase TrmH family n=1 Tax=Bacteroides coprophilus CAG:333 RepID=R6SC71_9BACE
tRNA/rRNA methyltransferase (spou); K03437 RNA methyltransferase, TrmH family
RNA methyltransferase TrmH family {ECO:0000313|EMBL:CDC58788.1}; TaxID=1263041 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides coprophilus CAG:333.;"
scnpilot_p_inoc_scaffold_310_curated_88
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(81738..84197)
DNA (2460bp) protein (820aa)
TonB-dependent receptor n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6N6_PALPW
tonb-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ADQ80380.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_310_curated_89
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(84321..85766)
DNA (1446bp) protein (482aa)
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Pyruvate kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6N7_PALPW
scnpilot_p_inoc_scaffold_310_curated_90
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(85793..86212)
DNA (420bp) protein (140aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
3-dehydroquinate dehydratase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6N8_PALPW
Displaying items 61-90 of 113 in total

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