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scnpilot_p_inoc_scaffold_100_curated_141

Organism: scnpilot_dereplicated_Paludibacter_1

near complete RP 51 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: 217815..218360

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SA72_PEDSD similarity UNIREF
DB: UNIREF100
  • Identity: 59.7
  • Coverage: 181.0
  • Bit_score: 210
  • Evalue 1.10e-51
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 59.7
  • Coverage: 181.0
  • Bit_score: 210
  • Evalue 3.50e-52
Tax=CG_Paludi_01 similarity UNIPROT
DB: UniProtKB
  • Identity: 66.5
  • Coverage: 173.0
  • Bit_score: 233
  • Evalue 3.00e-58

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Taxonomy

CG_Paludi_01 → Paludibacter → Bacteroidales → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 546
ATGAAAAACAACACCCACCATATTCACCTCAACGACAATCCGGAAATTGTATTCAGGATCATTGTCCGCACGTACCAGGAAAAGGTTATCCGGTTTATATCGTTGCTGGTTGTCAATCGCACCGAATGCGAAGAATTGGCTTCCGACGTATTTATGACGCTTTGGAACCAGCGCGAAAAGTTGAATGAAATCGAGAACCTGGATAATTATATTTTTATCATTGCACGGAACAAAGCATTGAATCATTTGCGAAAAGCGGCAGGTCCGACCCTCGATATCGACACGGTAAACGTCGATGTGTTCCACCATACTTCAACCACTCCCGAGTCGATTTACATCAGCAGAGAGACCGTCGAAGAGTTGAACGCGGCCATAAACGAGCTGCCTCAGAAAACAAAAATGGCGTTTACCCTGGTCCGCGAAAATAAAATGAAGTATAAAGATGCCGCCGAAGTATTGGGCGTGTCGGTAAAAACACTCGAAAAGCAAGTTGCATCTGCGATCGAAAAATTAAAAAATAAATTACGATCCTCCGGAAAATTTTAG
PROTEIN sequence
Length: 182
MKNNTHHIHLNDNPEIVFRIIVRTYQEKVIRFISLLVVNRTECEELASDVFMTLWNQREKLNEIENLDNYIFIIARNKALNHLRKAAGPTLDIDTVNVDVFHHTSTTPESIYISRETVEELNAAINELPQKTKMAFTLVRENKMKYKDAAEVLGVSVKTLEKQVASAIEKLKNKLRSSGKF*