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SCNpilot_BF_INOC_scaffold_0

Search features with annotation key words

Displaying items 451-480 of 619 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_0_451
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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486478..487074
DNA (597bp) protein (199aa)
Alpha-ribazole phosphatase n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W3Q4_DESAS
alpha-ribazole phosphatase
Alpha-ribazole phosphatase {ECO:0000313|EMBL:ACV63840.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidan
SCNpilot_BF_INOC_scaffold_0_452
GWC2_Clostridiales_40_7_curated, Clostridiales, Bacteria

Not on your lists

487207..487668
DNA (462bp) protein (154aa)
CheC-like protein id=4120004 bin=GWC2_Clostridiales_40_7 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
putative inhibitor of MCP methylation, CheC; K03409 chemotaxis protein CheX Tax=GWC2_Clostridiales_40_7_curated
putative inhibitor of MCP methylation, CheC
SCNpilot_BF_INOC_scaffold_0_453
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

487681..488148
DNA (468bp) protein (156aa)
spoU2; RNA methyltransferase SpoU (EC:2.1.1.207)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAM
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AY10_CLOA9
SCNpilot_BF_INOC_scaffold_0_454
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

488276..489928
DNA (1653bp) protein (551aa)
Na/Pi-cotransporter II-related protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TML5_ALKMQ
Sodium-dependent phosphate transporter {ECO:0000313|EMBL:KDR93840.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostr
Na/Pi-cotransporter II-like protein
SCNpilot_BF_INOC_scaffold_0_455
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

489939..490883
DNA (945bp) protein (315aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.
Thioredoxin reductase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TU49_ALKMQ
thioredoxin reductase
SCNpilot_BF_INOC_scaffold_0_456
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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490886..491203
DNA (318bp) protein (106aa)
Thioredoxin n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TU48_ALKMQ
thioredoxin domain-containing protein
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;
SCNpilot_BF_INOC_scaffold_0_457
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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491560..492696
DNA (1137bp) protein (379aa)
Putative ABC-type transport system, periplasmic component/surface lipoprotein n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WIT0_DESOD
ABC-type transport system, periplasmic component/surface lipoprotein
Putative ABC-type transport system, periplasmic component/surface lipoprotein {ECO:0000313|EMBL:AET69154.1}; Flags: Precursor;; TaxID=768706 species="Bacteria; Firmicutes; Clostridia; Clostridiales; P
SCNpilot_BF_INOC_scaffold_0_458
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

492945..494492
DNA (1548bp) protein (516aa)
Heme ABC transporter ATP-binding protein n=3 Tax=Youngiibacter RepID=V7I6V2_9CLOT
Heme ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETA81026.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fr
ABC transporter
SCNpilot_BF_INOC_scaffold_0_459
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

494482..495651
DNA (1170bp) protein (390aa)
ABC-type uncharacterized transport system, permease component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FFI0_9CLOT
ABC-type uncharacterized transport system, permease component {ECO:0000313|EMBL:EMS69277.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.
ABC transporter permease
SCNpilot_BF_INOC_scaffold_0_460
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

495651..496616
DNA (966bp) protein (322aa)
Branched-chain amino acid ABC transporter permease n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I572_9CLOT
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:ETA81028.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngi
ABC transporter permease
SCNpilot_BF_INOC_scaffold_0_461
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

496815..498230
DNA (1416bp) protein (472aa)
RNA polymerase sigma-54 factor n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DS52_9FIRM
RNA polymerase sigma-54 factor {ECO:0000313|EMBL:CDA90405.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
RNA polymerase, sigma 54 subunit, RpoN/SigL
SCNpilot_BF_INOC_scaffold_0_462
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

498496..499551
DNA (1056bp) protein (352aa)
Central glycolytic genes regulator n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RR37_9CLOT
Central glycolytic genes regulator {ECO:0000313|EMBL:CDF58657.1}; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere
DeoR2; transcriptional regulator
SCNpilot_BF_INOC_scaffold_0_463
bacterium UASB14, Bacteria

Not on your lists

499571..500629
DNA (1059bp) protein (353aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1499966 species="Bacteria.;" source="bacterium UASB14.;"
Glyceraldehyde-3-phosphate dehydrogenase id=4056322 bin=GWC2_Ignavibacteria_38_9 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
glyceraldehyde-3-phosphate dehydrogenase
SCNpilot_BF_INOC_scaffold_0_464
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

500705..501898
DNA (1194bp) protein (398aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=536227 species="Bacteria;
Phosphoglycerate kinase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PSA5_9CLOT
Phosphoglycerate kinase
SCNpilot_BF_INOC_scaffold_0_465
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

501908..502654
DNA (747bp) protein (249aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleB
Triosephosphate isomerase n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VW47_CLOBI
tpiA; triosephosphate isomerase
SCNpilot_BF_INOC_scaffold_0_466
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

502665..504191
DNA (1527bp) protein (509aa)
phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XDS2_9CLOT
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosp
SCNpilot_BF_INOC_scaffold_0_467
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

504323..505612
DNA (1290bp) protein (430aa)
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase {ECO:0000255|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000255|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000255|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000
Enolase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=ENO_ALKMQ
SCNpilot_BF_INOC_scaffold_0_468
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

505985..506218
DNA (234bp) protein (78aa)
Preprotein translocase subunit SecG n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AUC3_9CLOT
Preprotein translocase subunit SecG {ECO:0000313|EMBL:KGG80288.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacte
preprotein translocase subunit SecG
SCNpilot_BF_INOC_scaffold_0_469
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

506304..508286
DNA (1983bp) protein (661aa)
Putative K(+)-stimulated pyrophosphate-energized sodium pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound sodium-translocating pyrophosphatase {ECO:
hppA; Pyrophosphate-energized proton pump (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (Membrane-bound proton-translocating pyrophosphatase) (EC:3.6.1.1)
Putative K(+)-stimulated pyrophosphate-energized sodium pump n=2 Tax=Firmicutes RepID=R6PRN6_9FIRM
SCNpilot_BF_INOC_scaffold_0_470
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

508840..510951
DNA (2112bp) protein (704aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1262780 species="Bacteria; Firmicutes; Clostri
Ribonuclease R n=1 Tax=Clostridium sp. CAG:221 RepID=R6FX23_9CLOT
ribonuclease R
SCNpilot_BF_INOC_scaffold_0_471
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

511063..511881
DNA (819bp) protein (273aa)
HAD-superfamily hydrolase, subfamily IIB n=1 Tax=Clostridium termitidis CT1112 RepID=S0FHY2_9CLOT
HAD-superfamily hydrolase, subfamily IIB {ECO:0000313|EMBL:EMS69616.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridi
HAD-superfamily hydrolase
SCNpilot_BF_INOC_scaffold_0_472
[Eubacterium] nodatum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

512061..512522
DNA (462bp) protein (154aa)
SsrA-binding protein n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L4G9_9BACI
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1161902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis
smpB; SsrA-binding protein
SCNpilot_BF_INOC_scaffold_0_473
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(512830..514488)
DNA (1659bp) protein (553aa)
Site-specific recombinase, DNA invertase Pin n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UAJ5_9CLOT
Site-specific recombinase, DNA invertase Pin {ECO:0000313|EMBL:EKQ55419.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium s
site-specific recombinase, DNA invertase Pin
SCNpilot_BF_INOC_scaffold_0_474
unknown

Not on your lists

comp(514528..514695)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_0_475
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

515362..515958
DNA (597bp) protein (199aa)
Abortive phage infection protein n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I8K2_9CLOT
Abortive phage infection protein {ECO:0000313|EMBL:ETA81342.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 2
hypothetical protein
SCNpilot_BF_INOC_scaffold_0_476
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

515955..516800
DNA (846bp) protein (282aa)
Abortive phage infection protein n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I631_9CLOT
Abortive phage infection protein {ECO:0000313|EMBL:ETA81343.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 2
Domain of unknown function (DUF1814).
SCNpilot_BF_INOC_scaffold_0_477
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(516850..517272)
DNA (423bp) protein (141aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein n=2 Tax=Dehalobacter RepID=K4KPD2_9FIRM
DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein
DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein {ECO:0000313|EMBL:AFV04021.1}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehal
SCNpilot_BF_INOC_scaffold_0_478
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(517743..518987)
DNA (1245bp) protein (415aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=411489 species="Bacteria; Firmicutes; Clostri
DNA polymerase IV n=1 Tax=Clostridium sp. L2-50 RepID=A7VE15_9CLOT
DNA-directed DNA polymerase
SCNpilot_BF_INOC_scaffold_0_479
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

519152..519586
DNA (435bp) protein (145aa)
Putative transcriptional regulator n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KF10_9FIRM
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGL00257.1}; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gi
SCNpilot_BF_INOC_scaffold_0_480
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

519598..520137
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=N9YW99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ12057.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
Displaying items 451-480 of 619 in total

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