ggKbase home page

SCNpilot_BF_INOC_scaffold_17

Search features with annotation key words

Displaying items 1-30 of 744 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_17_1
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(106..1008)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MKF4_ALKOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW20286.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain Oh
SCNpilot_BF_INOC_scaffold_17_2
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1197..3368
DNA (2172bp) protein (724aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI0003663D7B
ATP-dependent DNA helicase replicase
SCNpilot_BF_INOC_scaffold_17_3
Treponema lecithinolyticum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(3409..4461)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Treponema lecithinolyticum ATCC 700332 RepID=U2M3T0_TRELE
Uncharacterized protein {ECO:0000313|EMBL:ERJ93988.1}; TaxID=1321815 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema lecithinolyticum ATCC 700332.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_17_4
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5132..6487
DNA (1356bp) protein (452aa)
Short chain fatty acids transporter n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CL85_9CLOT
Short chain fatty acids transporter {ECO:0000313|EMBL:EOC99455.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacte
short chain fatty acid transporter
SCNpilot_BF_INOC_scaffold_17_5
Amphibacillus xylanus, Amphibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6642..9005)
DNA (2364bp) protein (788aa)
Putative ABC transporter ATP-binding/permease protein n=1 Tax=Amphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01) RepID=K0J7P3_AMPXN
ABC transporter ATP-binding protein/permease rbh
Putative ABC transporter ATP-binding/permease protein {ECO:0000313|EMBL:BAM47718.1}; TaxID=698758 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Amphibacillus.;" source="Amphibacillu
SCNpilot_BF_INOC_scaffold_17_6
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9181..9855
DNA (675bp) protein (225aa)
Putative uncharacterized protein n=1 Tax=Clostridium clostridioforme 2_1_49FAA RepID=G5HUP0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62573.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
two component transcriptional regulator
SCNpilot_BF_INOC_scaffold_17_7
Paenibacillus barengoltzii, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9852..10919
DNA (1068bp) protein (356aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1235795 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" sou
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3M1_9BACL
signal transduction histidine kinase
SCNpilot_BF_INOC_scaffold_17_8
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11210..11893
DNA (684bp) protein (228aa)
Putative uncharacterized protein id=4993670 bin=GWA2_Bacteroidetes_42_15 species=Clostridium sp. D5 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
ATP synthase subunit delta; K09988 hypothetical protein Tax=GWE2_Bacteroidetes_42_39_curated
ABC-type sugar transport system, auxiliary component
SCNpilot_BF_INOC_scaffold_17_9
Thermoanaerobacter siderophilus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

11912..12856
DNA (945bp) protein (315aa)
Sugar kinase, ribokinase n=1 Tax=Thermoanaerobacter siderophilus SR4 RepID=I9KRU8_9THEO
PfkB domain-containing protein
Sugar kinase, ribokinase {ECO:0000313|EMBL:EIV99515.1}; TaxID=880478 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoana
SCNpilot_BF_INOC_scaffold_17_10
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13166..13978)
DNA (813bp) protein (271aa)
ABC transporter related n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MJH8_ALKOO
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ABW19960.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain Oh
SCNpilot_BF_INOC_scaffold_17_11
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13978..14982)
DNA (1005bp) protein (335aa)
ABC-type enterobactin transport system, permease component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FL53_9CLOT
ABC-type enterobactin transport system, permease component {ECO:0000313|EMBL:EMS72622.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;"
transporter permease
SCNpilot_BF_INOC_scaffold_17_12
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14979..16001)
DNA (1023bp) protein (341aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FL34_9CLOT
Iron ABC transporter {ECO:0000313|EMBL:KJF27036.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
ABC transporter permease
SCNpilot_BF_INOC_scaffold_17_13
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15998..17071)
DNA (1074bp) protein (358aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FVJ8_9CLOT
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:EMS72573.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostrid
periplasmic binding protein rbh
SCNpilot_BF_INOC_scaffold_17_14
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17414..18514
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI00030BBBAA
Uncharacterized protein {ECO:0000313|EMBL:EQB87698.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_17_15
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18527..21241
DNA (2715bp) protein (905aa)
Small GTP-binding protein n=1 Tax=Clostridium thermocellum BC1 RepID=U4MLU7_CLOTM
small GTP-binding protein
Small GTP-binding protein {ECO:0000313|EMBL:ABN51274.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (
SCNpilot_BF_INOC_scaffold_17_16
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21325..22533)
DNA (1209bp) protein (403aa)
Sugar (And other) transporter family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VRH9_CLOBI
Sugar (And other) transporter family protein {ECO:0000313|EMBL:EQK43371.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[
putative permease (Major facilitator superfamily)
SCNpilot_BF_INOC_scaffold_17_17
Enterococcus malodoratus, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22707..24212
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Enterococcus malodoratus ATCC 43197 RepID=R2QWI5_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:EOH72821.1}; TaxID=1158601 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus malodoratus ATCC 431
AraC family transcriptional regulator
SCNpilot_BF_INOC_scaffold_17_18
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

24196..24888
DNA (693bp) protein (231aa)
O-6-methylguanine DNA methyltransferase n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5G206_9ACTN
O-6-methylguanine DNA methyltransferase {ECO:0000313|EMBL:CCY06491.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samp
methylated-DNA--protein-cysteine methyltransferase
SCNpilot_BF_INOC_scaffold_17_19
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24995..25705
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BS39_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR19964.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_17_20
Streptococcus pneumoniae, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25852..26652)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Bacillus cereus HuA2-1 RepID=J9B583_BACCE
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1313 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus pneumoniae.;"
ABC-2 type transporter
SCNpilot_BF_INOC_scaffold_17_21
Gemella haemolysans, Gemella, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26652..27431)
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Gemella haemolysans M341 RepID=F3A1S3_9BACL
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=562981 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XI. Incertae Sedis; Gemella.;" source="Gemella haemolysan
ABC-2 type transporter
SCNpilot_BF_INOC_scaffold_17_22
Gemella haemolysans, Gemella, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27443..28240)
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Gemella haemolysans M341 RepID=F3A1S4_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EGF85625.1}; TaxID=562981 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XI. Incertae Sedis; Gemella.;" source="Gemella haemolysans M34
ABC transporter rbh
SCNpilot_BF_INOC_scaffold_17_23
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(28476..29477)
DNA (1002bp) protein (334aa)
Regulatory protein ArsR id=1779024 bin=GWB2_Clostridiales_37_7 species=Ethanoligenens harbinense genus=Ethanoligenens taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
regulatory protein ArsR Tax=GWB2_Clostridiales_37_7_curated
regulatory protein ArsR
SCNpilot_BF_INOC_scaffold_17_24
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29597..29842
DNA (246bp) protein (82aa)
DNA-binding protein n=1 Tax=Blautia producta RepID=UPI00037FFDB9
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ADL03143.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (stra
SCNpilot_BF_INOC_scaffold_17_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29832..30284
DNA (453bp) protein (151aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
Peptide deformylase n=51 Tax=Clostridium difficile RepID=G6BXR9_CLODI
def1; peptide deformylase 1
SCNpilot_BF_INOC_scaffold_17_26
Mesotoga prima, Mesotoga, Kosmotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

30301..30729
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Mesotoga prima MesG1.Ag.4.2 RepID=I2F873_9THEM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK08126.1}; TaxID=660470 species="Bacteria; Thermotogae; Kosmotogales; Kosmotogaceae; Mesotoga.;" source="Mesotoga prima MesG1.Ag.4.2.;"
SCNpilot_BF_INOC_scaffold_17_27
Candidatus Jettenia caeni, Candidatus Jettenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

30903..31136
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:GAB62249.1}; TaxID=247490 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae.;" source="planctomycete KSU-1.;"
SCNpilot_BF_INOC_scaffold_17_28
Halanaerobium saccharolyticum, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31293..33671
DNA (2379bp) protein (793aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5EFX6_9FIRM
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:CCU80133.1}; TaxID=1293054 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobia
diguanylate cyclase/phosphodiesterase with extracellular sensor
SCNpilot_BF_INOC_scaffold_17_29
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33740..34363
DNA (624bp) protein (208aa)
Bacterial regulatory s, tetR family protein n=1 Tax=Clostridium sordellii ATCC 9714 RepID=T0E5P5_CLOSO
TetR family transcriptional regulator {ECO:0000313|EMBL:KGK82246.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP2
TetR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_17_30
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34380..35372
DNA (993bp) protein (331aa)
ABC-type Co2+ transport system, permease component n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M2M4_CLOCD
ABC-type Co2+ transport system, permease component
ABC-type Co2+ transport system, permease component {ECO:0000313|EMBL:AEV67098.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclost
Displaying items 1-30 of 744 in total

View Taxonomy