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SCNpilot_BF_INOC_scaffold_221

Search features with annotation key words

Displaying items 61-90 of 238 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_221_61
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69974..70984
DNA (1011bp) protein (337aa)
tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylat
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000364CA5B
pseudouridine synthase
SCNpilot_BF_INOC_scaffold_221_62
unknown

Not on your lists

71093..71311
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_221_63
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71312..71839)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VK60_9GAMM
SMR domain protein
SMR domain protein {ECO:0000313|EMBL:AHX13694.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_BF_INOC_scaffold_221_64
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72134..72907
DNA (774bp) protein (258aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=1162282 spe
5'-nucleotidase SurE n=1 Tax=Rhodanobacter sp. 115 RepID=I4VK59_9GAMM
stationary phase survival protein SurE
SCNpilot_BF_INOC_scaffold_221_65
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72945..73622
DNA (678bp) protein (226aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:M
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003678230
protein-L-isoaspartate O-methyltransferase
SCNpilot_BF_INOC_scaffold_221_66
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73654..74259
DNA (606bp) protein (202aa)
Uncharacterized protein n=3 Tax=Xanthomonas campestris pv. translucens RepID=L0SQJ7_XANCT
Uncharacterized protein {ECO:0000313|EMBL:CCP38407.1}; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas trans
hypothetical protein
SCNpilot_BF_INOC_scaffold_221_67
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74260..75147
DNA (888bp) protein (296aa)
Lipoprotein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPI5_9GAMM
Lipoprotein {ECO:0000313|EMBL:EIM01377.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans L
peptidase M23
SCNpilot_BF_INOC_scaffold_221_68
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75239..76141
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003749BD2
RNA polymerase, sigma 28 subunit
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=187272 species="Bacteria; Proteobacteri
SCNpilot_BF_INOC_scaffold_221_69
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76176..76550)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NET7_9GAMM
hypothetical protein Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_221_70
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76565..76861)
DNA (297bp) protein (99aa)
RNA-binding protein n=1 Tax=Dyella japonica RepID=UPI00035CCDFA
RNA-binding protein
RNA-binding protein {ECO:0000313|EMBL:AHX13688.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_BF_INOC_scaffold_221_71

Not on your lists

76971..77591
DNA (621bp) protein (207aa)
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Rhodanobacter sp. 115 RepID=I4VK53_9GAMM
Marine sediment metagenome DNA, contig: S01H1_L01849 {ECO:0000313|EMBL:GAF85185.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
23S rRNA methyltransferase
SCNpilot_BF_INOC_scaffold_221_72
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77625..79562
DNA (1938bp) protein (646aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthom
ATP-dependent metalloprotease n=1 Tax=Dyella japonica RepID=UPI000373D589
hflB; ATP-dependent metalloprotease
SCNpilot_BF_INOC_scaffold_221_73
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79625..80518
DNA (894bp) protein (298aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|Rule
Dihydropteroate synthase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNN2_9GAMM
dihydropteroate synthase
SCNpilot_BF_INOC_scaffold_221_74
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80728..82377
DNA (1650bp) protein (550aa)
TPR repeat, SEL1 subfamily protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BPK5_9GAMM
TPR repeat, SEL1 subfamily protein {ECO:0000313|EMBL:EAR22506.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitr
peptidase C14 caspase catalytic subunit p20
SCNpilot_BF_INOC_scaffold_221_75
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

82437..87353
DNA (4917bp) protein (1639aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000371D797
hypothetical protein
Conserved repeat domain {ECO:0000313|EMBL:ABQ92587.1}; Flags: Precursor;; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" sour
SCNpilot_BF_INOC_scaffold_221_76
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87350..89323
DNA (1974bp) protein (658aa)
Putative Outer membrane autotransporter barrel domain protein n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4STQ9_META2
Uncharacterized protein {ECO:0000313|EMBL:KHD08357.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomarg
hypothetical protein
SCNpilot_BF_INOC_scaffold_221_77
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89349..91052
DNA (1704bp) protein (568aa)
Serine/threonine protein kinase n=1 Tax=Methylomicrobium album BG8 RepID=H8GN42_METAL
Serine/threonine protein kinase {ECO:0000313|EMBL:EIC30756.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methy
serine/threonine protein kinase
SCNpilot_BF_INOC_scaffold_221_78
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92106..93389
DNA (1284bp) protein (428aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1217721 sp
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003825EB7
trigger factor
SCNpilot_BF_INOC_scaffold_221_79
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

93415..94047
DNA (633bp) protein (211aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B69DFA
SCNpilot_BF_INOC_scaffold_221_80
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94163..95443
DNA (1281bp) protein (427aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L4N5_FRAAD
endopeptidase Clp ATP-binding regulatory subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadal
SCNpilot_BF_INOC_scaffold_221_81
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

95573..98080
DNA (2508bp) protein (836aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HA
Lon protease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6N0_9GAMM
ATP-dependent proteinase
SCNpilot_BF_INOC_scaffold_221_82
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98377..98649
DNA (273bp) protein (91aa)
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
Histone family protein DNA-binding protein id=2826656 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
DNA-binding protein
SCNpilot_BF_INOC_scaffold_221_83
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98945..100855
DNA (1911bp) protein (637aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomona
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003661C18
peptidylprolyl isomerase
SCNpilot_BF_INOC_scaffold_221_84
unknown

Not on your lists

100891..101109
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_221_85
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101129..102475)
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037FC77F
peptidoglycan-binding protein
Peptidoglycan-binding protein {ECO:0000313|EMBL:AHX13649.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangning
SCNpilot_BF_INOC_scaffold_221_86
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102472..103257)
DNA (786bp) protein (262aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000
Hydroxyacylglutathione hydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6N4_9GAMM
hydroxyacylglutathione hydrolase
SCNpilot_BF_INOC_scaffold_221_87
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

103360..104052
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003608295
methyltransferase type 11
Methyltransferase type 11 {ECO:0000313|EMBL:AIF48373.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;
SCNpilot_BF_INOC_scaffold_221_88
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104049..104504
DNA (456bp) protein (152aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00
Ribonuclease H id=3009702 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
rnhA; ribonuclease H
SCNpilot_BF_INOC_scaffold_221_89
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104501..105217
DNA (717bp) protein (239aa)
DNA polymerase III, epsilon subunit (EC:2.7.7.7)
DNA polymerase III subunit epsilon n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJX0_9GAMM
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:EIL87511.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhod
SCNpilot_BF_INOC_scaffold_221_90
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

105382..106704
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI00037DA2F6
Uncharacterized protein {ECO:0000313|EMBL:EDM82999.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED
hypothetical protein
Displaying items 61-90 of 238 in total

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