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SCNpilot_BF_INOC_scaffold_1207

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1207_1
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..906
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I6T3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM67733.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
SCNpilot_BF_INOC_scaffold_1207_2
unknown

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921..1325
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1207_3
unknown

Not on your lists

1521..1802
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1207_4
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

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2224..3006
DNA (783bp) protein (261aa)
Tax=BJP_IG2102_Clostridiales_34_350
SCNpilot_BF_INOC_scaffold_1207_5
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3385..3738
DNA (354bp) protein (118aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E918_9CLOT
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EEG32035.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium]
GntR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1207_6
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3800..4501
DNA (702bp) protein (234aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E917_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEG32034.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] m
ABC transporter rbh
SCNpilot_BF_INOC_scaffold_1207_7
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4495..5322
DNA (828bp) protein (276aa)
Putative ABC transporter, peremase protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I3C2_CLOCE
ABC transporter permease
Putative ABC transporter, peremase protein {ECO:0000313|EMBL:ACL76265.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridi
SCNpilot_BF_INOC_scaffold_1207_8
Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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5444..6241
DNA (798bp) protein (266aa)
Polysaccharide deacetylase n=1 Tax=Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) RepID=E4S4K3_CALKI
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ADQ41406.1}; TaxID=632335 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellul
SCNpilot_BF_INOC_scaffold_1207_9
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6748..7233
DNA (486bp) protein (162aa)
Ribosome maturation factor RimP n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IBU6_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus;
hypothetical protein
SCNpilot_BF_INOC_scaffold_1207_10
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7239..8291
DNA (1053bp) protein (351aa)
Transcription termination factor NusA n=3 Tax=root RepID=R5MK70_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environme
transcription termination factor NusA
SCNpilot_BF_INOC_scaffold_1207_11
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8351..8617
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8R3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42879.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococ
hypothetical protein
SCNpilot_BF_INOC_scaffold_1207_12
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8610..8894
DNA (285bp) protein (95aa)
Ribosomal protein L7Ae n=1 Tax=Clostridium sp. CAG:352 RepID=R6RCV1_9CLOT
Ribosomal protein L7Ae {ECO:0000313|EMBL:CDC40751.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
Ribosomal protein HS6-type (S12/L30/L7a)
SCNpilot_BF_INOC_scaffold_1207_13
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8902..11319
DNA (2418bp) protein (806aa)
Translation initiation factor IF-2 n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XYG4_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococc
translation initiation factor IF-2
SCNpilot_BF_INOC_scaffold_1207_14
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11477..11824
DNA (348bp) protein (116aa)
Ribosome-binding factor A n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LCE5_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012
ribosome-binding factor A
SCNpilot_BF_INOC_scaffold_1207_15
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11943..12893
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000381258C
DHHA1 domain protein {ECO:0000313|EMBL:CDC43989.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium si
conserved hypothetical protein
SCNpilot_BF_INOC_scaffold_1207_16
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12894..13772
DNA (879bp) protein (293aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) s
tRNA pseudouridine synthase B n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I8T6_9FIRM
tRNA pseudouridine synthase B
SCNpilot_BF_INOC_scaffold_1207_17
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13786..14685
DNA (900bp) protein (300aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1262798 species="Bacteria; Firmicutes;
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Clostridium sp. CAG:352 RepID=R6RCU3_9CLOT
riboflavin biosynthesis protein RibF
SCNpilot_BF_INOC_scaffold_1207_18
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14811..15299)
DNA (489bp) protein (163aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate is
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NSQ8_9FIRM
SCNpilot_BF_INOC_scaffold_1207_19
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15327..16586)
DNA (1260bp) protein (420aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate is
leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Clostridium sp. MSTE9 RepID=J0MYB3_9CLOT
SCNpilot_BF_INOC_scaffold_1207_20
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16616..18184)
DNA (1569bp) protein (523aa)
putative AIPM/Hcit synthase family transferase aq_356 (EC:2.3.3.-)
2-isopropylmalate synthase/homocitrate synthase family protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VNV2_9CLOT
2-isopropylmalate synthase/homocitrate synthase family protein {ECO:0000313|EMBL:EDO63012.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.
SCNpilot_BF_INOC_scaffold_1207_21
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18196..18702)
DNA (507bp) protein (169aa)
Acetolactate synthase small subunit n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FSI4_9FIRM
Acetolactate synthase small subunit {ECO:0000313|EMBL:CDB12419.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source=
acetolactate synthase small subunit
SCNpilot_BF_INOC_scaffold_1207_22
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18715..20379)
DNA (1665bp) protein (555aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostr
acetolactate synthase, large subunit (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VNV4_9CLOT
SCNpilot_BF_INOC_scaffold_1207_23
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21010..22245)
DNA (1236bp) protein (412aa)
Oxidoreductase n=1 Tax=Caloramator australicus RC3 RepID=I7J4S4_9CLOT
Oxidoreductase {ECO:0000313|EMBL:CCJ32951.1}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1207_24
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22537..23229
DNA (693bp) protein (231aa)
Response regulator receiver domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NTT4_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:CCY91483.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;"
winged helix family two component transcriptional regulator
SCNpilot_BF_INOC_scaffold_1207_25
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23281..24270
DNA (990bp) protein (330aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridiu
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYH8_9CLOT
integral membrane sensor signal transduction histidine kinase
SCNpilot_BF_INOC_scaffold_1207_26
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24227..24664
DNA (438bp) protein (146aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridiu
Two-component system sensor histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYH8_9CLOT
SCNpilot_BF_INOC_scaffold_1207_27
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24651..26201
DNA (1551bp) protein (517aa)
Trypsin n=1 Tax=Clostridium sp. MSTE9 RepID=J0N443_9CLOT
Trypsin {ECO:0000313|EMBL:EJF41589.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
SCNpilot_BF_INOC_scaffold_1207_28
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26381..27010
DNA (630bp) protein (210aa)
Sensory box/ggdef family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BPY5_NEPCE
Sensory box/ggdef family protein {ECO:0000313|EMBL:EAR62746.1}; TaxID=207954 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Neptuniibacter.;" source="Neptuniibacter caesari
SCNpilot_BF_INOC_scaffold_1207_29

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26968..28002
DNA (1035bp) protein (345aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM21357.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Two-component hybrid sensor and regulator id=1716399 bin=GWA2_Elusimicrobia_69_24 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
multi-sensor hybrid histidine kinase
Displaying 29 items

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