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SCNpilot_bf_inoc_scaffold_199_curated

Search features with annotation key words

Displaying items 1-30 of 120 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_199_curated_1
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

233..430
DNA (198bp) protein (66aa)
Putative uncharacterized protein id=3867998 bin=GWF2_Bacteroidetes_43_11 species=Pelodictyon phaeoclathratiforme genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes
hypothetical protein
Tax=GWF2_Bacteroidetes_43_11_curated
SCNpilot_bf_inoc_scaffold_199_curated_2
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

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480..2798
DNA (2319bp) protein (773aa)
TonB-dependent receptor id=3853758 bin=GWF2_Bacteroidetes_38_335 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
tonb-dependent receptor
Tax=GWF2_Bacteroidetes_38_335_curated
SCNpilot_bf_inoc_scaffold_199_curated_3
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

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2810..3631
DNA (822bp) protein (274aa)
Putative uncharacterized protein id=3853755 bin=GWF2_Bacteroidetes_38_335 species=Mucilaginibacter paludis genus=Mucilaginibacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
hypothetical protein
Tax=GWF2_Bacteroidetes_38_335_curated
SCNpilot_bf_inoc_scaffold_199_curated_4
Bacteroides coprosuis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3873..4415
DNA (543bp) protein (181aa)
MscS Mechanosensitive ion channel n=1 Tax=Bacteroides coprosuis DSM 18011 RepID=F3ZUJ4_9BACE
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:EGJ71159.1}; TaxID=679937 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprosuis DSM 18011.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_199_curated_5

Not on your lists

comp(4419..6320)
DNA (1902bp) protein (634aa)
GAF sensor signal transduction histidine kinase n=1 Tax=Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) RepID=E6XC78_CELAD
Uncharacterized protein {ECO:0000313|EMBL:KKO00164.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
gaf sensor signal transduction histidine kinase
SCNpilot_bf_inoc_scaffold_199_curated_6
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6599..8857
DNA (2259bp) protein (753aa)
Aconitase {ECO:0000313|EMBL:ADQ79190.1}; EC=4.2.1.3 {ECO:0000313|EMBL:ADQ79190.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
aconitase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitase id=2058389 bin=GWE2_Gammaproteobacteria_37_16 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Gammaproteobacteria_37_16 organism_group=Gammaproteobacteria organism_desc=Looks good, but small
SCNpilot_bf_inoc_scaffold_199_curated_7
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9048..10409
DNA (1362bp) protein (454aa)
citrate synthase; K01647 citrate synthase [EC:2.3.3.1]
Citrate synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T397_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_199_curated_8
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10417..11640
DNA (1224bp) protein (408aa)
isocitrate dehydrogenase (nadp) (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase [NADP] id=4755858 bin=GWC2_Bacteroidetes_46_850 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_199_curated_9
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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12033..13982
DNA (1950bp) protein (650aa)
Amylo-alpha-16-glucosidase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T088_PALPW
amylO-alpha-16-glucosidase
Amylo-alpha-16-glucosidase {ECO:0000313|EMBL:ADQ78278.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_199_curated_10
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13984..15240
DNA (1257bp) protein (419aa)
(1->4)-alpha-D-glucan synthase (ADP-glucose) n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T087_PALPW
(1->4)-alpha-d-glucan synthase
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_199_curated_11
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15299..16591
DNA (1293bp) protein (431aa)
ATP synthase f1 subcomplex epsilon subunit; K07405 alpha-amylase [EC:3.2.1.1]
ATP synthase F1 subcomplex epsilon subunit n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T086_PALPW
ATP synthase F1 subcomplex epsilon subunit {ECO:0000313|EMBL:ADQ78276.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_199_curated_12
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16671..18080
DNA (1410bp) protein (470aa)
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T082_PALPW
polynucleotide adenylyltransferase/metal dependent phosphohydrolase
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase {ECO:0000313|EMBL:ADQ78272.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_199_curated_13
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18123..18893)
DNA (771bp) protein (257aa)
5'-nucleotidase (EC:3.1.3.5 3.1.3.6 3.6.1.11); K03787 5'-nucleotidase [EC:3.1.3.5]
5'-nucleotidase SurE n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8P6_PALPW
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_199_curated_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18898..19626)
DNA (729bp) protein (243aa)
Protein involved in gliding motility GldF n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8P5_PALPW
gliding motility protein gldf; K01992 ABC-2 type transport system permease protein
Protein involved in gliding motility GldF {ECO:0000313|EMBL:ADQ81154.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_199_curated_15
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19675..20415)
DNA (741bp) protein (247aa)
metallophosphoesterase; K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
Metallophosphoesterase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3X4_PALPW
Metallophosphoesterase {ECO:0000313|EMBL:ADQ79418.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_199_curated_16
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20436..20768)
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3X5_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79419.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_199_curated_17
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20860..21258)
DNA (399bp) protein (133aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Thioesterase superfamily protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3X6_PALPW
Thioesterase superfamily protein {ECO:0000313|EMBL:ADQ79420.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_199_curated_18
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21261..21887)
DNA (627bp) protein (209aa)
O-methyltransferase family 3 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3X7_PALPW
O-methyltransferase family protein
O-methyltransferase family 3 {ECO:0000313|EMBL:ADQ79421.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_199_curated_19
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21887..23104)
DNA (1218bp) protein (406aa)
Peptidase M16 domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3X8_PALPW
peptidase m16 domain protein
Peptidase M16 domain protein {ECO:0000313|EMBL:ADQ79422.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_199_curated_20
Bacteroides massiliensis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23336..24184)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 RepID=U6R7L0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOA52179.1}; TaxID=1121098 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM; 13223.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_199_curated_21
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24468..26303)
DNA (1836bp) protein (612aa)
DNA topoisomerase iii (EC:5.99.1.2); K03169 DNA topoisomerase III [EC:5.99.1.2]
DNA topoisomerase {ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|SAAS:SAAS00046608};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
DNA topoisomerase III n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3X9_PALPW
SCNpilot_bf_inoc_scaffold_199_curated_22
unknown

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comp(26314..26412)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_199_curated_23
CG_Bacteroid_02, Bacteroidetes, Bacteria

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26447..27250
DNA (804bp) protein (268aa)
oxidoreductase FAD/NAD(P)-binding subunit; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2]
Oxidoreductase FAD/NAD(P)-binding domain protein id=3839915 bin=GWF2_Bacteroidetes_41_31 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
Tax=CG_Bacteroid_02
SCNpilot_bf_inoc_scaffold_199_curated_24
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27261..27653
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Bacteroides barnesiae RepID=UPI00035CAF17
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_199_curated_25
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27661..29562
DNA (1902bp) protein (634aa)
nh(3)-dependent nad(+) synthetase (EC:6.3.1.5); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
NH(3)-dependent NAD(+) synthetase {ECO:0000313|EMBL:ADQ79425.1}; EC=6.3.1.5 {ECO:0000313|EMBL:ADQ79425.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
NH(3)-dependent NAD(+) synthetase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3Y1_PALPW
SCNpilot_bf_inoc_scaffold_199_curated_26
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29567..30172)
DNA (606bp) protein (202aa)
Translation factor SUA5 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3W8_PALPW
translation factor sua5; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
Translation factor SUA5 {ECO:0000313|EMBL:ADQ79412.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_199_curated_27
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30174..31496)
DNA (1323bp) protein (441aa)
MATE efflux family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3V9_PALPW
mate efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:ADQ79403.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_199_curated_28
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31750..37509
DNA (5760bp) protein (1920aa)
Alpha-2-macroglobulin domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3W0_PALPW
alpha-2-macroglobulin domain-containing protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_199_curated_29
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


37648..38670
DNA (1023bp) protein (341aa)
Protein RecA n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0X7_PALPW
reca protein; K03553 recombination protein RecA
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_199_curated_30
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38918..39781)
DNA (864bp) protein (288aa)
RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3A0_PALPW
RNA polymerase, sigma 70 subunit, rpod subfamily; K03086 RNA polymerase primary sigma factor
Tax=CG_Paludi_01
Displaying items 1-30 of 120 in total

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