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SCNpilot_bf_inoc_scaffold_233_curated

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_233_curated_1
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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329..1468
DNA (1140bp) protein (380aa)
imidazoleglyceroL-phosphate dehydratase; histidinoL-phosphate phosphatase (EC:3.1.3.15 4.2.1.19); K01089 imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
Imidazoleglycerol-phosphate dehydratase; histidinol-phosphate phosphatase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T451_PALPW
Histidine biosynthesis bifunctional protein HisB {ECO:0000256|SAAS:SAAS00082593}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_233_curated_2
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1502..3094
DNA (1593bp) protein (531aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T452_PALPW
type II phosphodiesterase/nucleotide pyrophosphatase
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_233_curated_3
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3248..4417
DNA (1170bp) protein (390aa)
aminotransferase class i and ii; K14155 cystathione beta-lyase [EC:4.4.1.8]
Aminotransferase class I and II n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T453_PALPW
Aminotransferase class I and II {ECO:0000313|EMBL:ADQ79497.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_233_curated_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4414..5082
DNA (669bp) protein (223aa)
uraciL-DNA glycosylase (EC:3.2.2.-); K03648 uracil-DNA glycosylase [EC:3.2.2.27]
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Uracil-DNA glycosylase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T454_PALPW
SCNpilot_bf_inoc_scaffold_233_curated_5

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5132..5881
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z341_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD32249.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
lipid a phosphate methyltransferase
SCNpilot_bf_inoc_scaffold_233_curated_6
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5901..6548
DNA (648bp) protein (216aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2X4_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79068.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_233_curated_7
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6620..9730
DNA (3111bp) protein (1037aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T414_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79458.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_233_curated_8
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9751..10257
DNA (507bp) protein (169aa)
DNA-3-methyladenine glycosylase (EC:3.2.2.21); K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21]
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
DNA-3-methyladenine glycosylase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T433_PALPW
SCNpilot_bf_inoc_scaffold_233_curated_9
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10491..14642
DNA (4152bp) protein (1384aa)
Glycosyl hydrolase family 32 protein n=1 Tax=Clostridium intestinale URNW RepID=U2Q642_9CLOT
Glycosyl hydrolase family 32 protein {ECO:0000313|EMBL:ERK31614.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
beta-fructosidase, levanase/invertase
SCNpilot_bf_inoc_scaffold_233_curated_10
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

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14729..16069
DNA (1341bp) protein (447aa)
Sugar porter (SP) family MFS transporter n=1 Tax=Bacteroides fragilis HMW 616 RepID=K1FAT5_BACFG
sugar transporter
Tax=RBG_13_Bacteroidetes_42_15_curated
SCNpilot_bf_inoc_scaffold_233_curated_11
Bacteroides pyogenes, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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16079..16957
DNA (879bp) protein (293aa)
Sugar kinases, ribokinase family (EC:2.7.1.4)
2-dehydro-3-deoxygluconokinase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037C370A
Fructokinase {ECO:0000313|EMBL:GAE18664.1}; TaxID=1121100 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides pyogenes DSM 20611 = JCM 6294.;"
SCNpilot_bf_inoc_scaffold_233_curated_12
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(16998..17573)
DNA (576bp) protein (192aa)
id=4534894 bin=GWF2_Bacteroidetes_35_48 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
Tax=GWF2_Bacteroidetes_35_48_curated
SCNpilot_bf_inoc_scaffold_233_curated_13
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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17622..20393
DNA (2772bp) protein (924aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IWE5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK02455.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
two-component system sensor histidine kinase/response regulator, hybrid
SCNpilot_bf_inoc_scaffold_233_curated_14
unknown

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20584..21792
DNA (1209bp) protein (403aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_233_curated_15
unknown

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21799..22698
DNA (900bp) protein (300aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_233_curated_16
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22701..24713
DNA (2013bp) protein (671aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6G6_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80310.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_233_curated_17
unknown

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24720..25361
DNA (642bp) protein (214aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_233_curated_18
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(25358..26872)
DNA (1515bp) protein (505aa)
Carbohydrate kinase, YjeF related protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T808_PALPW
carbohydrate kinase, yjef related protein
Carbohydrate kinase, YjeF related protein {ECO:0000313|EMBL:ADQ80852.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_233_curated_19
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(26972..27610)
DNA (639bp) protein (213aa)
Putative uncharacterized protein id=1744344 bin=GWB2_Clostridiales_37_7 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=CG_Paludi_01
SCNpilot_bf_inoc_scaffold_233_curated_20
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27635..28435)
DNA (801bp) protein (267aa)
Peptidase M48 Ste24p n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T645_PALPW
peptidase m48 ste24p
Peptidase M48 Ste24p {ECO:0000313|EMBL:ADQ80189.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_233_curated_21
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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28719..30248
DNA (1530bp) protein (510aa)
phosphoglycerate mutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" sour
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T591_PALPW
SCNpilot_bf_inoc_scaffold_233_curated_22
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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30314..33055
DNA (2742bp) protein (914aa)
Methionine synthase (B12-dependent) {ECO:0000313|EMBL:ADQ79886.1}; EC=2.1.1.13 {ECO:0000313|EMBL:ADQ79886.1};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
methionine synthase (b12-dependent) (EC:2.1.1.13); K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
Methionine synthase (B12-dependent) n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T592_PALPW
SCNpilot_bf_inoc_scaffold_233_curated_23
unknown

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comp(33131..33301)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_233_curated_24
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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33480..34598
DNA (1119bp) protein (373aa)
Glycosyl transferase group 1 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T588_PALPW
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADQ79882.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_bf_inoc_scaffold_233_curated_25
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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34682..37297
DNA (2616bp) protein (872aa)
DNA mismatch repair protein MutS n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T587_PALPW
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
DNA mismatch repair protein muts; K03555 DNA mismatch repair protein MutS
SCNpilot_bf_inoc_scaffold_233_curated_26
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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37584..38657
DNA (1074bp) protein (358aa)
phosphoserine aminotransferase apoenzyme (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Phosphoserine aminotransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T586_PALPW
SCNpilot_bf_inoc_scaffold_233_curated_27
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

38654..39571
DNA (918bp) protein (306aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:ADQ79879.1}; EC=1.1.1.95 {ECO:0000313|EMBL:ADQ79879.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
D-3-phosphoglycerate dehydrogenase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T585_PALPW
SCNpilot_bf_inoc_scaffold_233_curated_28
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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39706..40803
DNA (1098bp) protein (366aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 1_1_30 RepID=F7MAC8_9BACE
1,4-beta-xylanase {ECO:0000313|EMBL:AHW60256.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
Cellulase (glycosyl hydrolase family 5).
SCNpilot_bf_inoc_scaffold_233_curated_29
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(40878..43019)
DNA (2142bp) protein (714aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
RNAse r (EC:3.1.-.-); K12573 ribonuclease R [EC:3.1.-.-]
Ribonuclease R n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T775_PALPW
SCNpilot_bf_inoc_scaffold_233_curated_30
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43134..44018
DNA (885bp) protein (295aa)
Diacylglycerol kinase catalytic region n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T774_PALPW
diacylglycerol kinase catalytic subunit; K07029
Diacylglycerol kinase catalytic region {ECO:0000313|EMBL:ADQ80568.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Displaying items 1-30 of 97 in total

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