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SCNpilot_bf_inoc_scaffold_2018_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_2018_curated_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2..835)
DNA (834bp) protein (278aa)
mannose-1-phosphate guanylyltransferase; K00971 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase n=3 Tax=Parabacteroides merdae RepID=K5ZEC0_9PORP
Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase {ECO:0000313|EMBL:EDN88320.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
SCNpilot_bf_inoc_scaffold_2018_curated_2
Bacteroides sp. 1_1_14, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1176..2381
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Alistipes onderdonkii RepID=UPI000376D6F3
Putative uncharacterized protein {ECO:0000313|EMBL:EFI05884.1}; TaxID=469585 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_14.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_2018_curated_3
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2399..3028)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI000369981D
Tellurite resistance protein TehB {ECO:0000313|EMBL:GAF05638.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans DSM 9555 = JCM 21142.;"
methyltransferase family protein
SCNpilot_bf_inoc_scaffold_2018_curated_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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3332..4027
DNA (696bp) protein (232aa)
pcm; protein-L-isoaspartate(D-aspartate) O-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
protein-L-isoaspartate O-methyltransferase n=1 Tax=Thermophagus xiamenensis RepID=UPI000255D934
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
SCNpilot_bf_inoc_scaffold_2018_curated_5
unknown

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4460..4549
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_2018_curated_6
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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4724..7753
DNA (3030bp) protein (1010aa)
TonB-dependent receptor plug n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J5D0_CYCMS
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:AEL27566.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
SCNpilot_bf_inoc_scaffold_2018_curated_7
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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7798..9378
DNA (1581bp) protein (527aa)
RagB/SusD domain-containing protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J5D1_CYCMS
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AEL27567.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
SCNpilot_bf_inoc_scaffold_2018_curated_8
unknown

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comp(9475..9606)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_2018_curated_9
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9805..11424
DNA (1620bp) protein (540aa)
ribosomal large subunit pseudouridine synthase A; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Pseudouridine synthase n=2 Tax=Parabacteroides RepID=N2B567_9PORP
RluA family pseudouridine synthase {ECO:0000313|EMBL:EOS13260.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
SCNpilot_bf_inoc_scaffold_2018_curated_10
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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11658..12254
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K6A1P3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KKB60124.1}; TaxID=927665 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii DSM 19448 = WAL 12034.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_2018_curated_11
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(12470..14332)
DNA (1863bp) protein (621aa)
Uncharacterized protein n=2 Tax=Parabacteroides johnsonii RepID=K5Z6R0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN11239.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
xanthan lyase
SCNpilot_bf_inoc_scaffold_2018_curated_12
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(14349..16448)
DNA (2100bp) protein (700aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K5YU46_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EOS16331.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
glucose-inhibited division protein A
Displaying 12 items

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