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SCNpilot_bf_inoc_scaffold_797_curated

Search features with annotation key words

Displaying items 1-30 of 130 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_797_curated_1
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..485
DNA (483bp) protein (161aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
cytochrome C oxidase subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase subunit 2 n=1 Tax=Comamonas testosteroni S44 RepID=D8DDQ2_COMTE
SCNpilot_bf_inoc_scaffold_797_curated_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

583..2124
DNA (1542bp) protein (514aa)
cytochrome c oxidase subunit i; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
cytochrome oxidase subunit I n=1 Tax=Variovorax paradoxus RepID=UPI00037A7F85
Cytochrome c oxidase, subunit I {ECO:0000313|EMBL:EJL71567.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_bf_inoc_scaffold_797_curated_3
unknown

Not on your lists

2142..2264
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_797_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2280..2573
DNA (294bp) protein (98aa)
Cytochrome c oxidase assembly protein CtaG/Cox11 n=2 Tax=Alicycliphilus denitrificans RepID=E8U1F1_ALIDB
cytochrome c oxidase assembly protein CtaG/Cox11; K02258 cytochrome c oxidase assembly protein subunit 11
Cytochrome c oxidase assembly protein CtaG/Cox11 {ECO:0000313|EMBL:AEB86276.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_797_curated_5
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2573..2869
DNA (297bp) protein (99aa)
Cytochrome c oxidase assembly protein CtaG/Cox11 n=2 Tax=Acidovorax RepID=A1WBM2_ACISJ
cytochrome c oxidase assembly protein; K02258 cytochrome c oxidase assembly protein subunit 11
Cytochrome c oxidase assembly protein CtaG/Cox11 {ECO:0000313|EMBL:ABM43647.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_797_curated_6
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2866..3180
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SKP2_METPP
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_bf_inoc_scaffold_797_curated_7
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3188..4069
DNA (882bp) protein (294aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Cytochrome c oxidase subunit III n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MF19_ACIET
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:ACM34289.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_797_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4142..4378)
DNA (237bp) protein (79aa)
Putative transmembrane protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1E8_ALIDB
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:ADV01201.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_bf_inoc_scaffold_797_curated_9
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4394..5122
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EBK0_9BURK
Transmembrane cytochrome oxidase {ECO:0000313|EMBL:KJA10655.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
cytochrome oxidase
SCNpilot_bf_inoc_scaffold_797_curated_10
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5157..5801
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZC4_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG94481.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_797_curated_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5854..6987
DNA (1134bp) protein (378aa)
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15 id=12549791 bin=BDI species=Acidovorax ebreus genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_797_curated_12
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6984..7889
DNA (906bp) protein (302aa)
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] id=5082463 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_797_curated_13
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7886..8512
DNA (627bp) protein (209aa)
Electron transport protein SCO1/SenC n=2 Tax=Acidovorax RepID=A1WBL4_ACISJ
electron transport protein SCO1/SenC; K07152
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_797_curated_14
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8599..9585)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MF10_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34280.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_797_curated_15
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9754..10692)
DNA (939bp) protein (313aa)
RNA polymerase sigma factor RpoH n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MF09_ACIET
RNA polymerase sigma-32 subunit RpoH; K03089 RNA polymerase sigma-32 factor
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_bf_inoc_scaffold_797_curated_16
unknown

Not on your lists

10913..11356
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_797_curated_17
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11457..12368)
DNA (912bp) protein (304aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q123T4_POLSJ
LysR family transcriptional regulator
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_bf_inoc_scaffold_797_curated_18
unknown

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comp(12535..12747)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_797_curated_19
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13077..13499
DNA (423bp) protein (141aa)
4-oxalomesaconate hydratase; K10220 4-oxalmesaconate hydratase [EC:4.2.1.83]
4-oxalomesaconate hydratase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KVL1_9BURK
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_797_curated_20
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13696..14379
DNA (684bp) protein (228aa)
hypothetical protein; K10218 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase n=4 Tax=Bacteria RepID=A9C0K5_DELAS
4-hydroxy-4-methyl-2-oxoglutarate aldolase {ECO:0000313|EMBL:EPD35058.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
SCNpilot_bf_inoc_scaffold_797_curated_21
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14528..15460
DNA (933bp) protein (311aa)
amidohydrolase 2; K10221 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
Amidohydrolase 2 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MHP5_9BURK
2-pyrone-4,6-dicarboxylate hydrolase {ECO:0000313|EMBL:EXU79829.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
SCNpilot_bf_inoc_scaffold_797_curated_22
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15602..16966
DNA (1365bp) protein (455aa)
pcmA; protocatechuate 4,5-dioxygenase (EC:1.13.11.8); K04099 protocatechuate 4,5-dioxygenase [EC:1.13.11.8]
Protocatechuate 4,5-dioxygenase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BS84_9BURK
Protocatechuate 4,5-dioxygenase {ECO:0000313|EMBL:EHL24726.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
SCNpilot_bf_inoc_scaffold_797_curated_23
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17022..17981
DNA (960bp) protein (320aa)
oxidoreductase domain-containing protein; K10219 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
Oxidoreductase domain protein n=2 Tax=Delftia RepID=A9C0K1_DELAS
Oxidoreductase domain protein {ECO:0000313|EMBL:ABX37074.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_bf_inoc_scaffold_797_curated_24
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18031..19053
DNA (1023bp) protein (341aa)
Aldo/keto reductase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BS87_9BURK
Aldo/keto reductase {ECO:0000313|EMBL:EHL24729.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
aldo/keto reductase
SCNpilot_bf_inoc_scaffold_797_curated_25
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19177..19923
DNA (747bp) protein (249aa)
Protein tyrosine/serine phosphatase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TVR0_ACIAC
protein tyrosine/serine phosphatase
Protein tyrosine/serine phosphatase {ECO:0000313|EMBL:ABM35048.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_bf_inoc_scaffold_797_curated_26
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19937..20965)
DNA (1029bp) protein (343aa)
Exopolyphosphatase {ECO:0000313|EMBL:CDS49335.1}; EC=3.6.1.11 {ECO:0000313|EMBL:CDS49335.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
ppx; Metaphosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Metaphosphatase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y153_RAMTT
SCNpilot_bf_inoc_scaffold_797_curated_27
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21021..22730)
DNA (1710bp) protein (570aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J3CYA5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80959.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
putative inner membrane transmembrane protein
SCNpilot_bf_inoc_scaffold_797_curated_28
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(22833..23087)
DNA (255bp) protein (85aa)
50S ribosomal protein L31 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQ41_9BURK
50S ribosomal protein L31 {ECO:0000256|RuleBase:RU000564}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
50S ribosomal protein L31P; K02909 large subunit ribosomal protein L31
SCNpilot_bf_inoc_scaffold_797_curated_29
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23200..24537)
DNA (1338bp) protein (446aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
transcription termination factor Rho n=1 Tax=Variovorax paradoxus RepID=UPI00035D84E3
rho; transcription termination factor rho; K03628 transcription termination factor Rho
SCNpilot_bf_inoc_scaffold_797_curated_30
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24791..25123)
DNA (333bp) protein (111aa)
Thioredoxin n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQ39_9BURK
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
trx; thioredoxin Trx
Displaying items 1-30 of 130 in total

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