ggKbase home page

SCNpilot_bf_inoc_scaffold_763_curated

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_763_curated_1
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..434)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZDC6_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ15280.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
cytochrome C oxidase assembly protein, AA3 subunit-controlling protein
SCNpilot_bf_inoc_scaffold_763_curated_2
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(436..1071)
DNA (636bp) protein (212aa)
SCO1/SenC/PrrC protein n=1 Tax=Herbaspirillum sp. CF444 RepID=J2UBK3_9BURK
SCO1/SenC/PrrC protein {ECO:0000313|EMBL:EJL88662.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_763_curated_3
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1071..1835)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G939_HERAR
SURF1-like protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCNpilot_bf_inoc_scaffold_763_curated_4
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1890..2096
DNA (207bp) protein (69aa)
membrane protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00037A981D
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:ELA00470.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
SCNpilot_bf_inoc_scaffold_763_curated_5
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2156..3022)
DNA (867bp) protein (289aa)
coxC; cytochrome c oxidase subunit III (EC:1.9.3.1); K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Cytochrome c oxidase, subunit III n=1 Tax=Limnobacter sp. MED105 RepID=A6GLS8_9BURK
Cytochrome c oxidase, subunit III {ECO:0000313|EMBL:EDM84959.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
SCNpilot_bf_inoc_scaffold_763_curated_6
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3987..4655)
DNA (669bp) protein (223aa)
Cytochrome c oxidase polypeptide I {ECO:0000313|EMBL:CCJ51709.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CCJ51709.1};; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain Bpp5).;"
Cytochrome c oxidase polypeptide I n=3 Tax=Bordetella bronchiseptica RepID=K0MYX1_BORBM
ctaD; cytochrome c oxidase polypeptide I
SCNpilot_bf_inoc_scaffold_763_curated_7
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4631..5515)
DNA (885bp) protein (295aa)
coxA; cytochrome c oxidase polypeptide I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I) (Cytochrome aa3 subunit 1) n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G944_HERAR
Cytochrome oxidase subunit I {ECO:0000313|EMBL:KIF80034.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
SCNpilot_bf_inoc_scaffold_763_curated_8
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5571..6800)
DNA (1230bp) protein (410aa)
coxB; cytochrome c oxidase, subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
Cytochrome c oxidase subunit 2 n=2 Tax=Cupriavidus RepID=Q1LRS9_RALME
SCNpilot_bf_inoc_scaffold_763_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6806..7309)
DNA (504bp) protein (168aa)
Putative transmembrane protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CJV3_VARPS
transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:ACS21004.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_bf_inoc_scaffold_763_curated_10
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7400..8323)
DNA (924bp) protein (308aa)
hypothetical protein; K02169 malonyl-CoA O-methyltransferase [EC:2.1.1.197]
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21XU4_RHOFD
Biotin synthase {ECO:0000313|EMBL:KJA10648.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
SCNpilot_bf_inoc_scaffold_763_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8351..9082
DNA (732bp) protein (244aa)
ComF family protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CJV5_VARPS
Variovorax paradoxus strain MEDvA23 contig_136, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16151.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ComF family protein
SCNpilot_bf_inoc_scaffold_763_curated_12
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9111..9578
DNA (468bp) protein (156aa)
tRNA/rRNA methyltransferase-like protein; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZD6_RAMTT
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_bf_inoc_scaffold_763_curated_13
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9582..10355)
DNA (774bp) protein (258aa)
3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HSY3_9BURK
3-deoxy-D-manno-octulosonic-acid transferase
3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein {ECO:0000313|EMBL:AFU46038.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_bf_inoc_scaffold_763_curated_14
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10895..12346)
DNA (1452bp) protein (484aa)
phosphomannomutase (EC:5.4.2.8); K01840 phosphomannomutase [EC:5.4.2.8]
Phosphomannomutase {ECO:0000313|EMBL:ABM42197.1}; EC=5.4.2.8 {ECO:0000313|EMBL:ABM42197.1};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Phosphomannomutase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W7H2_ACISJ
SCNpilot_bf_inoc_scaffold_763_curated_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12452..13366
DNA (915bp) protein (305aa)
multidrug DMT transporter permease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000379A72F
Permeases of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:GAD21287.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_763_curated_16
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13363..14004)
DNA (642bp) protein (214aa)
riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] id=12553922 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9]
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:KJA09356.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
SCNpilot_bf_inoc_scaffold_763_curated_17

Not on your lists

14412..15752
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2D0U9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98935.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phage integrase family protein
SCNpilot_bf_inoc_scaffold_763_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15854..16411
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G7I0_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB85510.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_763_curated_19
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16577..16822
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WB33_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM43458.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_bf_inoc_scaffold_763_curated_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16843..17181
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CUX8_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS20414.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_bf_inoc_scaffold_763_curated_21
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17181..19094
DNA (1914bp) protein (638aa)
Primase 2 n=1 Tax=Acidovorax sp. NO-1 RepID=H0C2Y8_9BURK
Primase 2 {ECO:0000313|EMBL:EHL21063.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_763_curated_22
unknown

Not on your lists

19431..19697
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_763_curated_23
unknown

Not on your lists

19719..20411
DNA (693bp) protein (231aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_763_curated_24
unknown

Not on your lists

21148..21354
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_763_curated_25
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21554..22597)
DNA (1044bp) protein (348aa)
HrcA family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002377470
heat-inducible transcription repressor HrcA
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_763_curated_26
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22625..23521
DNA (897bp) protein (299aa)
ATP-NAD/AcoX kinase; K00858 NAD+ kinase [EC:2.7.1.23]
NAD kinase {ECO:0000255|HAMAP-Rule:MF_00361}; EC=2.7.1.23 {ECO:0000255|HAMAP-Rule:MF_00361};; ATP-dependent NAD kinase {ECO:0000255|HAMAP-Rule:MF_00361}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=PPNK_ACIAC rbh
SCNpilot_bf_inoc_scaffold_763_curated_27
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23525..25228
DNA (1704bp) protein (568aa)
DNA repair protein RecN n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XYR6_RAMTT
recN; DNA repair ATPase; K03631 DNA repair protein RecN (Recombination protein N)
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_763_curated_28
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25225..26130
DNA (906bp) protein (302aa)
UPF0042 nucleotide-binding protein Q5W_4229 id=1274876 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Nucleotide-binding protein Y695_03759 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
P-loop-containing kinase; K06958 UPF0042 nucleotide-binding protein
SCNpilot_bf_inoc_scaffold_763_curated_29
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26219..27025)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y481_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG92546.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_763_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27028..28338)
DNA (1311bp) protein (437aa)
O-acetylhomoserine (thiol)-lyase (EC:2.5.1.49)
O-acetylhomoserine (Thiol)-lyase {ECO:0000313|EMBL:AGU48876.1}; EC=2.5.1.49 {ECO:0000313|EMBL:AGU48876.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
O-acetylhomoserine (Thiol)-lyase n=1 Tax=Variovorax paradoxus B4 RepID=T1X8R4_VARPD
Displaying items 1-30 of 57 in total

View Taxonomy