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SCNpilot_bf_inoc_scaffold_67_curated

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Displaying items 91-120 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_67_curated_91
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(91629..92255)
DNA (627bp) protein (209aa)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; Uridine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
uridine kinase; K00876 uridine kinase [EC:2.7.1.48]
Uridine kinase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MGH2_ALKOO
SCNpilot_bf_inoc_scaffold_67_curated_92
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(92278..93507)
DNA (1230bp) protein (410aa)
Peptidase, U32 family {ECO:0000313|EMBL:EFH14554.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFH14554.1};; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
protease; K08303 putative protease [EC:3.4.-.-]
Peptidase, U32 family n=6 Tax=Clostridium difficile RepID=D5Q5M2_CLODI
SCNpilot_bf_inoc_scaffold_67_curated_93
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(93504..94172)
DNA (669bp) protein (223aa)
S-adenosylmethionine-dependent methyltransferase n=3 Tax=Clostridium acetobutylicum RepID=F0K5C3_CLOAE
S-adenosylmethionine-dependent methyltransferase
S-adenosylmethionine-dependent methyltransferase {ECO:0000313|EMBL:AAK79652.1}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG; 5710 / VKM B-1787).;"
SCNpilot_bf_inoc_scaffold_67_curated_94
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(94173..95183)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZHH7_9CLOT
aminodeoxychorismate lyase; K07082 UPF0755 protein
Tax=BJP_IG2103_Clostridiales_50_15
SCNpilot_bf_inoc_scaffold_67_curated_95
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(95206..97044)
DNA (1839bp) protein (613aa)
metallo-beta-lactamase superfamily hydrolase; K12574 ribonuclease J [EC:3.1.-.-] rbh
Zn-dependent hydrolase, RNA-metabolising n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CMM0_9CLOT
Ribonuclease J {ECO:0000313|EMBL:ERM91655.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterraneus subsp. yonseiensis KB-1.;"
SCNpilot_bf_inoc_scaffold_67_curated_96
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(97132..97575)
DNA (444bp) protein (148aa)
Ferric uptake regulator, Fur family n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MGH8_ALKOO
Fur family transcriptional regulator {ECO:0000313|EMBL:KJF28219.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
ferric uptake regulator family protein; K03711 Fur family transcriptional regulator, ferric uptake regulator
SCNpilot_bf_inoc_scaffold_67_curated_97
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(97600..97890)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI0003091D2B
Uncharacterized protein {ECO:0000313|EMBL:KDR96248.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
Protein of unknown function (DUF1292).
SCNpilot_bf_inoc_scaffold_67_curated_98
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(97909..98349)
DNA (441bp) protein (147aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
Holliday junction resolvase-like protein; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4VXH0_CLOBI
SCNpilot_bf_inoc_scaffold_67_curated_99
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(98403..99353)
DNA (951bp) protein (317aa)
Ferredoxin n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CMM5_9CLOT
Ferredoxin {ECO:0000313|EMBL:EOC99950.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
aldo/keto reductase
SCNpilot_bf_inoc_scaffold_67_curated_100
Bacillus cellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(99350..99604)
DNA (255bp) protein (85aa)
UPF0297 protein Bcell_1526 n=1 Tax=Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) RepID=E6TVA5_BACCJ
hypothetical protein
UPF0297 protein Bcell_1526 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=649639 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141; / JCM 9156 / N-4).;"
SCNpilot_bf_inoc_scaffold_67_curated_101
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(99659..102283)
DNA (2625bp) protein (875aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
alaS; alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZ95_9FIRM
SCNpilot_bf_inoc_scaffold_67_curated_102
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(102587..103033)
DNA (447bp) protein (149aa)
Nitrogen-fixing NifU domain protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TQZ0_ALKMQ
NifU domain-containing protein; K04488 nitrogen fixation protein NifU and related proteins
Nitrogen-fixing NifU domain protein {ECO:0000313|EMBL:ABR48608.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_67_curated_103
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(103036..104211)
DNA (1176bp) protein (392aa)
cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7]
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
Cysteine desulfurase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MGI7_ALKOO
SCNpilot_bf_inoc_scaffold_67_curated_104
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(104231..104692)
DNA (462bp) protein (154aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MGI8_ALKOO
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:ABW19211.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_67_curated_105
Aneurinibacillus aneurinilyticus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

104859..105710
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1Y3B8_ANEAE
Uncharacterized protein {ECO:0000313|EMBL:ERI05406.1}; TaxID=649747 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneurinibacillus.;" source="Aneurinibacillus aneurinilyticus ATCC 12856.;"
SCNpilot_bf_inoc_scaffold_67_curated_106
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(105789..106331)
DNA (543bp) protein (181aa)
DJ-1 family protein n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9F2N9_CLOSG
thij/PfpI family protein
Thiamine biosynthesis protein ThiJ {ECO:0000313|EMBL:KEJ02863.1}; TaxID=1379740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum A2B3 87.;"
SCNpilot_bf_inoc_scaffold_67_curated_107
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(106354..107148)
DNA (795bp) protein (265aa)
Putative Transglutaminase-like enzyme, cysteine protease n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PX22_CLOSD
transglutaminase-like enzyme, cysteine protease
Putative Transglutaminase-like enzyme, cysteine protease {ECO:0000313|EMBL:CBH20987.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_67_curated_108
Peptostreptococcaceae bacterium OBRC8, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(107165..108232)
DNA (1068bp) protein (356aa)
Twitching motility protein n=1 Tax=Eubacteriaceae bacterium OBRC8 RepID=J5UNF0_9FIRM
Twitching motility protein {ECO:0000313|EMBL:EJU23884.1}; TaxID=796941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium OBRC8.;"
pilT; twitching mobility protein
SCNpilot_bf_inoc_scaffold_67_curated_109
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(108229..108882)
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PX20_CLOSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH20985.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_67_curated_110
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(108854..109357)
DNA (504bp) protein (168aa)
Putative uncharacterized protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PX19_CLOSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH20984.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_67_curated_111
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(109361..109873)
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PX18_CLOSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH20983.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_67_curated_112
[Eubacterium] yurii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(109880..110182)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. AS15 RepID=J4KBG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFM40011.1}; TaxID=864565 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Eubacterium] yurii subsp. margaretiae ATCC 43715.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_67_curated_113
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(110192..111247)
DNA (1056bp) protein (352aa)
Putative Type II secretion system protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PX16_CLOSD
type II secretion system protein; K02653 type IV pilus assembly protein PilC
Putative Type II secretion system protein {ECO:0000313|EMBL:CBH20981.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_67_curated_114
unknown

Not on your lists

111470..111772
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_67_curated_115
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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comp(111843..113177)
DNA (1335bp) protein (445aa)
ATPase n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AGF2_9FIRM
ATPase {ECO:0000313|EMBL:CCX40929.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
AAA ATPase
SCNpilot_bf_inoc_scaffold_67_curated_116
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(113193..113837)
DNA (645bp) protein (215aa)
GntR domain protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VBN2_9FIRM
bacterial regulatory s, gntR family protein
Tax=BJP_IG2157_Clostridiales_35_16
SCNpilot_bf_inoc_scaffold_67_curated_117
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

113954..114544
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LD83_ACEWD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFA49128.1}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
SCNpilot_bf_inoc_scaffold_67_curated_118
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(114598..115668)
DNA (1071bp) protein (357aa)
Response regulator receiver protein n=1 Tax=Thermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3) RepID=D7ARH0_THEM3
response regulator receiver protein
Tax=BJP_IG2102_Clostridiales_34_350
SCNpilot_bf_inoc_scaffold_67_curated_119
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(115684..116841)
DNA (1158bp) protein (386aa)
Putative signal transduction protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FGC0_9CLOT
Putative signal transduction protein {ECO:0000313|EMBL:EMS70405.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
signal transduction protein
SCNpilot_bf_inoc_scaffold_67_curated_120
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(117001..118059)
DNA (1059bp) protein (353aa)
Ornithine racemase {ECO:0000313|EMBL:CDF58307.1}; EC=5.1.1.12 {ECO:0000313|EMBL:CDF58307.1};; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere DSM 8682.;"
Ornithine racemase n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RQ19_9CLOT
alanine racemase domain-containing protein
Displaying items 91-120 of 178 in total

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