ggKbase home page

SCNpilot_bf_inoc_scaffold_67_curated

Search features with annotation key words

Displaying items 151-178 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_67_curated_151
Listeria marthii, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(152527..152781)
DNA (255bp) protein (85aa)
Phage shock protein C, PspC n=1 Tax=Listeria marthii FSL S4-120 RepID=E3YT25_9LIST
Phage shock protein C, PspC {ECO:0000313|EMBL:EFR86746.1}; TaxID=702457 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria marthii FSL S4-120.;"
PspC protein
SCNpilot_bf_inoc_scaffold_67_curated_152
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(152888..155362)
DNA (2475bp) protein (825aa)
5-methyltetrahydrofolate--homocysteine methyltransferase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:ACD24053.1}; Putative methionine synthase {ECO:0000313|EMBL:CDH91759.1}; EC=2.1.1.13 {ECO:0000313|EMBL:CDH91759.1};; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
homocysteine methyltransferase n=1 Tax=Clostridium botulinum RepID=UPI0002D9B431
SCNpilot_bf_inoc_scaffold_67_curated_153
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(155355..156071)
DNA (717bp) protein (239aa)
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5TEP8_9CLOT
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:CCZ61769.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
Vitamin B12 dependent methionine synthase activation subunit
SCNpilot_bf_inoc_scaffold_67_curated_154
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(156121..156990)
DNA (870bp) protein (290aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
metF; 5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20); K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]
Methylenetetrahydrofolate reductase n=2 Tax=Clostridium botulinum B RepID=B2TP86_CLOBB
SCNpilot_bf_inoc_scaffold_67_curated_155
Leptotrichia goodfellowii, Leptotrichia, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(157019..158227)
DNA (1209bp) protein (403aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=596323 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Leptotrichia.;" source="Leptotrichia goodfellowii F0264.;"
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4]
Aspartokinase n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GJX6_9FUSO
SCNpilot_bf_inoc_scaffold_67_curated_156
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(158550..160427)
DNA (1878bp) protein (626aa)
Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AS94_9CLOT
Lipid A export ATP-binding/permease protein MsbA {ECO:0000313|EMBL:EOC99511.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_bf_inoc_scaffold_67_curated_157
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(160461..162203)
DNA (1743bp) protein (581aa)
Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CLF9_9CLOT
Lipid A export ATP-binding/permease protein MsbA {ECO:0000313|EMBL:EOC99510.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
ABC transporter ATP-binding protein
SCNpilot_bf_inoc_scaffold_67_curated_158
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(162619..163272)
DNA (654bp) protein (218aa)
L-fuculose phosphate aldolase; K01628 L-fuculose-phosphate aldolase [EC:4.1.2.17]
L-fuculose phosphate aldolase n=1 Tax=Clostridium novyi (strain NT) RepID=A0Q282_CLONN
Aldolase {ECO:0000313|EMBL:KEH91960.1}; TaxID=1443126 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C/D str. It1.;"
SCNpilot_bf_inoc_scaffold_67_curated_159
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(163283..164053)
DNA (771bp) protein (257aa)
Purine nucleoside phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; Short=PNP {ECO:0000256|HAMAP-Rule:MF_01963};; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01963};; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
putative 6-oxopurine nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase n=1 Tax=Caloramator australicus RC3 RepID=I7LI24_9CLOT
SCNpilot_bf_inoc_scaffold_67_curated_160
Thermoanaerobacter wiegelii, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(164057..165094)
DNA (1038bp) protein (346aa)
methylthioribose-1-phosphate isomerase; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=697303 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter wiegelii Rt8.B1.;"
Methylthioribose-1-phosphate isomerase n=1 Tax=Thermoanaerobacter wiegelii Rt8.B1 RepID=G2MT51_9THEO
SCNpilot_bf_inoc_scaffold_67_curated_161
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(165158..166450)
DNA (1293bp) protein (431aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000256|HAMAP-Rule:MF_01281}; Short=MTA/SAH deaminase {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.28 {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.31 {ECO:0000256|HAMAP-Rule:MF_01281};; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
5-methylthioadenosine/S-adenosylhomocysteine deaminase; K12960 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Clostridium ultunense Esp RepID=M1Z1T6_9CLOT
SCNpilot_bf_inoc_scaffold_67_curated_162
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(166494..167201)
DNA (708bp) protein (236aa)
plsC2; 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B511_CLOA9
SCNpilot_bf_inoc_scaffold_67_curated_163
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(167394..168674)
DNA (1281bp) protein (427aa)
Response regulator receiver sensor signal transduction histidine kinase id=3238888 bin=GWC2_Clostridiales_40_7 species=Caldicellulosiruptor saccharolyticus genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
ATP-binding protein {ECO:0000313|EMBL:KDR94559.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
ATP-binding protein
SCNpilot_bf_inoc_scaffold_67_curated_164
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(168809..169984)
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGZ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98464.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
FliB family protein
SCNpilot_bf_inoc_scaffold_67_curated_165
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(170040..170756)
DNA (717bp) protein (239aa)
Probable transcriptional regulatory protein L21TH_1293 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AVK4_9CLOT
Probable transcriptional regulatory protein L21TH_1293 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
YebC/PmpR family DNA-binding regulatory protein
SCNpilot_bf_inoc_scaffold_67_curated_166
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(170825..171568)
DNA (744bp) protein (248aa)
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
NAD+ synthetase; K01916 NAD+ synthase [EC:6.3.1.5]
NH(3)-dependent NAD(+) synthetase n=1 Tax=Geobacillus sp. (strain WCH70) RepID=C5D5F3_GEOSW
SCNpilot_bf_inoc_scaffold_67_curated_167
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(171620..172009)
DNA (390bp) protein (130aa)
CoA-binding domain protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TQC0_ALKMQ
CoA-binding domain-containing protein
CoA-binding domain protein {ECO:0000313|EMBL:ABR48388.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_67_curated_168
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(172061..172765)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MHP1_ALKOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW19323.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_67_curated_169
Peptostreptococcus anaerobius CAG:621, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(172774..174045)
DNA (1272bp) protein (424aa)
GTPase HflX n=1 Tax=Peptostreptococcus anaerobius CAG:621 RepID=R5J4I4_9FIRM
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1263100 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus; environmental samples.;" source="Peptostreptococcus anaerobius CAG:621.;"
hflX; GTPase
SCNpilot_bf_inoc_scaffold_67_curated_170
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

174249..177635
DNA (3387bp) protein (1129aa)
Multimodular transpeptidase-transglycosylase {ECO:0000313|EMBL:EOD01518.1}; EC=2.4.1.129 {ECO:0000313|EMBL:EOD01518.1};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
1A family penicillin-binding protein (EC:2.4.1.129); K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Multimodular transpeptidase-transglycosylase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AWI4_9CLOT
SCNpilot_bf_inoc_scaffold_67_curated_171
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(177936..179144)
DNA (1209bp) protein (403aa)
Probable tRNA sulfurtransferase {ECO:0000255|HAMAP-Rule:MF_00021}; EC=2.8.1.4 {ECO:0000255|HAMAP-Rule:MF_00021};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000255|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000255|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000255|HAMAP-Rule:MF_00021}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
Probable tRNA sulfurtransferase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=THII_ALKMQ rbh
thiamine biosynthesis protein ThiI; K03151 thiamine biosynthesis protein ThiI
SCNpilot_bf_inoc_scaffold_67_curated_172
Thermoanaerobacter sp. YS13, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(179169..180326)
DNA (1158bp) protein (386aa)
Cysteine desulfurase {ECO:0000313|EMBL:KHO62825.1}; EC=2.8.1.7 {ECO:0000313|EMBL:KHO62825.1};; TaxID=1511746 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter sp. YS13.;"
class V aminotransferase; K04487 cysteine desulfurase [EC:2.8.1.7]
Aminotransferase class V n=1 Tax=Thermoanaerobacter ethanolicus JW 200 RepID=F1ZVJ5_THEET
SCNpilot_bf_inoc_scaffold_67_curated_173
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

180444..181433
DNA (990bp) protein (330aa)
asparaginase/glutaminase; K01424 L-asparaginase [EC:3.5.1.1]
L-asparaginase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CCA8_9CLOT
Asparaginase {ECO:0000313|EMBL:KGG79766.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
SCNpilot_bf_inoc_scaffold_67_curated_174
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(181530..182600)
DNA (1071bp) protein (357aa)
Putative metal-dependent phosphohydrolase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CPH7_9CLOT
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ABN52132.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
SCNpilot_bf_inoc_scaffold_67_curated_175
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(182615..183061)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CE61_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOD00570.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
nucleoside recognition domain-containing protein
SCNpilot_bf_inoc_scaffold_67_curated_176
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(183079..183498)
DNA (420bp) protein (140aa)
Nucleoside recognition domain protein n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LTZ7_TEPAE
nucleoside recognition domain-containing protein
Putative integral inner membrane protein (Part 1) {ECO:0000313|EMBL:CCP25034.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
SCNpilot_bf_inoc_scaffold_67_curated_177
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

183611..184654
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AU65_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOD00708.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
exonuclease-like protein
SCNpilot_bf_inoc_scaffold_67_curated_178
unknown

Not on your lists

185732..185887
DNA (156bp) protein (52aa)

This feature has no annotations

Displaying items 151-178 of 178 in total

View Taxonomy