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SCNpilot_bf_inoc_scaffold_60_curated

Search features with annotation key words

Displaying items 61-90 of 185 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_60_curated_61
GWC2_Clostridiales_40_7_curated, Clostridiales, Bacteria

Not on your lists

61098..62180
DNA (1083bp) protein (361aa)
metal ion ABC transporter periplasmic protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2EBA7
metal ion ABC transporter periplasmic protein; K09815 zinc transport system substrate-binding protein
Tax=GWC2_Clostridiales_40_7_curated
SCNpilot_bf_inoc_scaffold_60_curated_62
Ilyobacter polytropus, Ilyobacter, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

62177..62869
DNA (693bp) protein (231aa)
ABC transporter; K09817 zinc transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter id=4259859 bin=GWC2_Clostridiales_40_7 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
ABC transporter related protein {ECO:0000313|EMBL:ADO84150.1}; TaxID=572544 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Ilyobacter.;" source="Ilyobacter polytropus (strain DSM 2926 / CuHBu1).;"
SCNpilot_bf_inoc_scaffold_60_curated_63
GWC2_Clostridiales_40_7_curated, Clostridiales, Bacteria

Not on your lists

62879..63697
DNA (819bp) protein (273aa)
ABC transporter n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2EBA5
ABC-3 protein; K09816 zinc transport system permease protein
Tax=GWC2_Clostridiales_40_7_curated
SCNpilot_bf_inoc_scaffold_60_curated_64
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

63707..64144
DNA (438bp) protein (146aa)
Fur family transcriptional regulator n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2EBA4
Uncharacterized protein {ECO:0000313|EMBL:CDZ23996.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Fe2+/Zn2+ uptake regulation protein; K03711 Fur family transcriptional regulator, ferric uptake regulator
SCNpilot_bf_inoc_scaffold_60_curated_65
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(64265..65758)
DNA (1494bp) protein (498aa)
hypothetical protein n=1 Tax=Bacillus sp. L1(2012) RepID=UPI000345130C
copper amine oxidase domain-containing protein
Copper amine oxidase domain-containing protein {ECO:0000313|EMBL:AEI45438.1}; TaxID=1036673 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus (strain KNP414).;"
SCNpilot_bf_inoc_scaffold_60_curated_66
Dethiobacter alkaliphilus, Dethiobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(65980..66807)
DNA (828bp) protein (276aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDK1_9FIRM
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EEG78722.1}; TaxID=555088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Dethiobacter.;" source="Dethiobacter alkaliphilus AHT 1.;"
methyl-accepting chemotaxis sensory transducer
SCNpilot_bf_inoc_scaffold_60_curated_67
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

67172..68545
DNA (1374bp) protein (458aa)
MATE efflux family protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PUW7_CLOSD
Multidrug transporter MatE {ECO:0000313|EMBL:KJF26906.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
mate efflux family protein
SCNpilot_bf_inoc_scaffold_60_curated_68
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

68736..70007
DNA (1272bp) protein (424aa)
Arsenical pump family protein id=2284842 bin=GWB2_Clostridiales_37_7 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
arsenical pump family protein
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_60_curated_69
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

70020..70499
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Haloplasma contractile SSD-17B RepID=U2EB84_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KGG81344.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_60_curated_70
unknown

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70663..71121
DNA (459bp) protein (153aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_71
unknown

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71183..72169
DNA (987bp) protein (329aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_72
unknown

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72186..72572
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_73
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

72695..73834
DNA (1140bp) protein (380aa)
acyl-CoA dehydrogenase, short-chain specific (EC:1.3.8.1); K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1]
Acyl-CoA dehydrogenase, short-chain specific {ECO:0000313|EMBL:CBH21255.1}; EC=1.3.99.2 {ECO:0000313|EMBL:CBH21255.1};; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
Acyl-CoA dehydrogenase, short-chain specific n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PXU0_CLOSD
SCNpilot_bf_inoc_scaffold_60_curated_74
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

73858..74640
DNA (783bp) protein (261aa)
Electron transfer flavoprotein alpha/beta-subunit n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MM30_ALKOO
electron transfer flavoprotein alpha/beta-subunit; K03521 electron transfer flavoprotein beta subunit
Electron transfer flavoprotein alpha/beta-subunit {ECO:0000313|EMBL:ABW18197.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_60_curated_75
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

74652..75671
DNA (1020bp) protein (340aa)
Electron transfer flavoprotein alpha/beta-subunit n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MM31_ALKOO
electron transfer flavoprotein alpha/beta-subunit; K03522 electron transfer flavoprotein alpha subunit
Electron transfer flavoprotein alpha/beta-subunit {ECO:0000313|EMBL:ABW18198.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_60_curated_76
unknown

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75779..76159
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_77
unknown

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comp(76295..77728)
DNA (1434bp) protein (478aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_78
Bacillus selenatarsenatis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(77743..78813)
DNA (1071bp) protein (357aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:GAM15112.1};; TaxID=1321606 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus selenatarsenatis SF-1.;"
two-component sensor histidine kinase (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Bacillus sp. 17376 RepID=V6T0H7_9BACI
SCNpilot_bf_inoc_scaffold_60_curated_79
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(78817..79500)
DNA (684bp) protein (228aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus lactis 154 RepID=G4HA09_9BACL
Uncharacterized protein {ECO:0000313|EMBL:KJS12907.1}; TaxID=1629715 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
two-component response regulator
SCNpilot_bf_inoc_scaffold_60_curated_80
Bacillus cellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(79555..80721)
DNA (1167bp) protein (389aa)
D-alanine/D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4]
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=649639 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141; / JCM 9156 / N-4).;"
D-alanine--D-alanine ligase n=1 Tax=Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) RepID=E6U1T2_BACCJ
SCNpilot_bf_inoc_scaffold_60_curated_81
Bacillus cellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(80750..82330)
DNA (1581bp) protein (527aa)
Mur ligase middle domain-containing protein; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=649639 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141; / JCM 9156 / N-4).;"
Mur ligase n=1 Tax=Marinococcus halotolerans RepID=UPI0003B39C5D
SCNpilot_bf_inoc_scaffold_60_curated_82
Gracilibacillus halophilus, Gracilibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(82330..83091)
DNA (762bp) protein (254aa)
Alpha/beta hydrolase fold protein n=1 Tax=Gracilibacillus halophilus YIM-C55.5 RepID=N4WP25_9BACI
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ENH97887.1}; TaxID=1308866 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Gracilibacillus.;" source="Gracilibacillus halophilus YIM-C55.5.;"
alpha/beta hydrolase fold protein
SCNpilot_bf_inoc_scaffold_60_curated_83
[Eubacterium] yurii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

83271..85187
DNA (1917bp) protein (639aa)
Uncharacterized protein n=1 Tax=Eubacterium yurii subsp. margaretiae ATCC 43715 RepID=E0QIZ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFM39244.1}; TaxID=864565 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Eubacterium] yurii subsp. margaretiae ATCC 43715.;"
SCNpilot_bf_inoc_scaffold_60_curated_84
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

85467..87077
DNA (1611bp) protein (537aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2]
CTP synthase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AX44_9CLOT
SCNpilot_bf_inoc_scaffold_60_curated_85
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

87262..87648
DNA (387bp) protein (129aa)
3-aminobutyryl-CoA ammonia-lyase {ECO:0000313|EMBL:EOD01910.1}; EC=4.3.1.14 {ECO:0000313|EMBL:EOD01910.1};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
3-aminobutyryl-CoA ammonia-lyase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CI03_9CLOT
hypothetical protein
SCNpilot_bf_inoc_scaffold_60_curated_86
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

87658..88470
DNA (813bp) protein (271aa)
Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TK30_ALKMQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR46548.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_60_curated_87
unknown

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comp(88602..90476)
DNA (1875bp) protein (625aa)
copper amine oxidase-like protein
SCNpilot_bf_inoc_scaffold_60_curated_88
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

90713..92206
DNA (1494bp) protein (498aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
Transcription termination factor Rho n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TK35_ALKMQ
rho; transcription termination factor Rho; K03628 transcription termination factor Rho
SCNpilot_bf_inoc_scaffold_60_curated_89
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


92319..92519
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=1 Tax=Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) RepID=F6B645_DESCC
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
SCNpilot_bf_inoc_scaffold_60_curated_90
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

92734..93330
DNA (597bp) protein (199aa)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
tdk; thymidine kinase Tdk (EC:2.7.1.21)
Thymidine kinase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PVE8_9CLOT
Displaying items 61-90 of 185 in total

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