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SCNpilot_bf_inoc_scaffold_60_curated

Search features with annotation key words

Displaying items 1-30 of 185 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_60_curated_1
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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186..875
DNA (690bp) protein (230aa)
Transcriptional regulator, GntR family n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LUI6_TEPAE
Transcriptional regulator {ECO:0000313|EMBL:KDR94202.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
GntR family transcriptional regulator
SCNpilot_bf_inoc_scaffold_60_curated_2
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

908..1420
DNA (513bp) protein (171aa)
3H domain protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MEB0_ALKOO
Transcriptional regulator {ECO:0000313|EMBL:KJF25603.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
3H domain-containing protein; K07105
SCNpilot_bf_inoc_scaffold_60_curated_3
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1705..2730
DNA (1026bp) protein (342aa)
Phosphotransferase system, EIIC n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TJ96_ALKMQ
phosphotransferase system, EIIC; K07035
Phosphotransferase system, EIIC {ECO:0000313|EMBL:ABR46264.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_60_curated_4
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3175..3960
DNA (786bp) protein (262aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=649755 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides ATCC 27803.;"
murI; glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3]
Glutamate racemase n=1 Tax=[Eubacterium] cylindroides ATCC 27803 RepID=U2QVA3_9FIRM
SCNpilot_bf_inoc_scaffold_60_curated_5
unknown

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3962..4231
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_6
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4321..5508)
DNA (1188bp) protein (396aa)
aspC; aspartate aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1]
Aspartate aminotransferase n=54 Tax=Clostridium difficile RepID=T2W3G1_CLODI
Aspartate aminotransferase {ECO:0000313|EMBL:KGG81226.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
SCNpilot_bf_inoc_scaffold_60_curated_7
unknown

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5630..5806
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_8
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

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5808..7262
DNA (1455bp) protein (485aa)
Orn/Lys/Arg decarboxylase major region n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MEF8_ALKOO
Orn/Lys/Arg decarboxylase major region
Tax=BJP_IG2102_Clostridiales_34_350
SCNpilot_bf_inoc_scaffold_60_curated_9
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7326..7886
DNA (561bp) protein (187aa)
signal peptidase i (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89]
Signal peptidase I {ECO:0000256|RuleBase:RU003993, ECO:0000313|EMBL:CBH20656.1}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993, ECO:0000313|EMBL:CBH20656.1};; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
Signal peptidase I n=1 Tax=Clostridium sordellii ATCC 9714 RepID=T0CTH1_CLOSO
SCNpilot_bf_inoc_scaffold_60_curated_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7942..8265
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MEG0_ALKOO
Uncharacterized protein {ECO:0000313|EMBL:KJU70574.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_60_curated_11
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8275..9126
DNA (852bp) protein (284aa)
AAA ATPase n=1 Tax=Clostridium sp. CAG:470 RepID=R7FFR3_9CLOT
AAA ATPase {ECO:0000313|EMBL:CDE14149.1}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
DNA polymerase III, delta' subunit
SCNpilot_bf_inoc_scaffold_60_curated_12
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9127..10035
DNA (909bp) protein (303aa)
PSP1 domain-containing protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AWT4_CLOA9
PSP1 domain-containing protein
PSP1 domain-containing protein {ECO:0000313|EMBL:AFS77195.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
SCNpilot_bf_inoc_scaffold_60_curated_13
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10218..11006
DNA (789bp) protein (263aa)
methyltransferase small; K15460 tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
Methyltransferase small n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TJG5_ALKMQ
Methyltransferase small {ECO:0000313|EMBL:ABR46333.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_60_curated_14
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11003..11833
DNA (831bp) protein (277aa)
uroporphyrin-III C/tetrapyrrole methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TJG6_ALKMQ
SCNpilot_bf_inoc_scaffold_60_curated_15
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11985..12227)
DNA (243bp) protein (81aa)
Transcription regulator n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AVA2_CLOA9
abrB1; transcriptional regulator
Transcription regulator {ECO:0000313|EMBL:AFS77199.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
SCNpilot_bf_inoc_scaffold_60_curated_16
unknown

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comp(12347..12829)
DNA (483bp) protein (161aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_17
unknown

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comp(12942..13334)
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_18
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13880..15841
DNA (1962bp) protein (654aa)
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
Methionine--tRNA ligase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MK61_ALKOO
SCNpilot_bf_inoc_scaffold_60_curated_19
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16069..16902
DNA (834bp) protein (278aa)
TatD family hydrolase; K03424 TatD DNase family protein [EC:3.1.21.-]
Hydrolase, TatD family n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TJI5_ALKMQ
Hydrolase, TatD family {ECO:0000313|EMBL:ABR46353.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_60_curated_20
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16928..17473
DNA (546bp) protein (182aa)
Ribonuclease M5 {ECO:0000256|HAMAP-Rule:MF_01469}; EC=3.1.26.8 {ECO:0000256|HAMAP-Rule:MF_01469};; RNase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; Ribosomal RNA terminal maturase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
primase/topoisomerase-like protein; K05985 ribonuclease M5 [EC:3.1.26.8]
Ribonuclease M5 n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TJK8_ALKMQ
SCNpilot_bf_inoc_scaffold_60_curated_21
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17480..18370
DNA (891bp) protein (297aa)
ksgA; dimethyladenosine transferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
Ribosomal RNA small subunit methyltransferase A {ECO:0000255|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000255|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000255|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000255|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000255|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000255|HAMAP-Rule:MF_00607}; TaxID=350688 species="Bacteria; Firmicutes; Cl
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=RSMA_ALKOO rbh
SCNpilot_bf_inoc_scaffold_60_curated_22
Ilyobacter polytropus, Ilyobacter, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

18351..18911
DNA (561bp) protein (187aa)
N-acetyltransferase GCN5; K03790 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
Putative ribosomal-protein-alanine acetyltransferase n=1 Tax=Paenibacillus sp. P22 RepID=T2LSY8_9BACL
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADO84498.1}; TaxID=572544 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Ilyobacter.;" source="Ilyobacter polytropus (strain DSM 2926 / CuHBu1).;"
SCNpilot_bf_inoc_scaffold_60_curated_23
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18924..19781
DNA (858bp) protein (286aa)
DegV domain-containing protein yitS n=1 Tax=Clostridium ultunense Esp RepID=M1Z4W6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGG80581.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
degV family protein
SCNpilot_bf_inoc_scaffold_60_curated_24
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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19816..21015
DNA (1200bp) protein (400aa)
Putative metal-dependent phosphohydrolase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CPH7_9CLOT
Putative metal-dependent phosphohydrolase {ECO:0000313|EMBL:EOD00571.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
metal dependent phosphohydrolase
SCNpilot_bf_inoc_scaffold_60_curated_25
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21444..22691
DNA (1248bp) protein (416aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CA78_9CLOT
SCNpilot_bf_inoc_scaffold_60_curated_26
unknown

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22818..23585
DNA (768bp) protein (256aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_27
unknown

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23582..24043
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_28
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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24393..25142
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CBB1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOC99599.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
Lytic transglycosylase catalytic
SCNpilot_bf_inoc_scaffold_60_curated_29
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25265..27652
DNA (2388bp) protein (796aa)
DNA helicase, Rad3 n=1 Tax=Thermoanaerobacterium thermosaccharolyticum M0795 RepID=L0IJP9_THETR
ATP-dependent helicase {ECO:0000313|EMBL:KGK88185.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
DNA helicase, Rad3
SCNpilot_bf_inoc_scaffold_60_curated_30
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27649..28509
DNA (861bp) protein (287aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
yngB; UTP--glucose-1-phosphate uridylyltransferase YngB (EC:2.7.7.9)
UTP-glucose-1-phosphate uridylyltransferase n=1 Tax=Clostridium intestinale URNW RepID=U2NK23_9CLOT
Displaying items 1-30 of 185 in total

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