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SCNpilot_bf_inoc_scaffold_60_curated

Search features with annotation key words

Displaying items 151-180 of 185 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_60_curated_151
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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153000..153473
DNA (474bp) protein (158aa)
FliS n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PUL0_CLOSD
fliS; flis; K02422 flagellar protein FliS
FliS {ECO:0000313|EMBL:CBH22448.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_60_curated_152
unknown

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153558..153737
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_153
unknown

Not on your lists

153794..154231
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_60_curated_154
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

154307..154837
DNA (531bp) protein (177aa)
Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MJN7_ALKOO
sigma 54 modulation protein/ribosomal protein S30EA; K05808 putative sigma-54 modulation protein
Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:ABW20019.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_60_curated_155
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(155190..155561)
DNA (372bp) protein (124aa)
Toxin-antitoxin system, antitoxin component, Xre family n=1 Tax=Turicibacter sanguinis PC909 RepID=D4W1W6_9FIRM
Toxin-antitoxin system, antitoxin component, Xre family {ECO:0000313|EMBL:EFF65093.1}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter sanguinis PC909.;"
SCNpilot_bf_inoc_scaffold_60_curated_156
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

155906..156502
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MJN6_ALKOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW20018.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_60_curated_157
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

156629..159370
DNA (2742bp) protein (914aa)
Protein translocase subunit SecA n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CNW9_9CLOT
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
secA; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA
SCNpilot_bf_inoc_scaffold_60_curated_158
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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159690..160700
DNA (1011bp) protein (337aa)
Peptide chain release factor 2 n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VVK2_CLOBI
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
peptide chain release factor 2; K02836 peptide chain release factor 2
SCNpilot_bf_inoc_scaffold_60_curated_159
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

160678..163008
DNA (2331bp) protein (777aa)
RNA binding S1 domain protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TLF6_ALKMQ
Uncharacterized protein {ECO:0000313|EMBL:KJF25860.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
RNA-binding S1 domain-containing protein; K06959 uncharacterized protein
SCNpilot_bf_inoc_scaffold_60_curated_160
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

163216..164376
DNA (1161bp) protein (387aa)
hutI; imidazolonepropionase (EC:3.5.2.7)
Putative imidazolonepropionase {ECO:0000313|EMBL:CBH20930.1}; EC=3.5.2.7 {ECO:0000313|EMBL:CBH20930.1};; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
Putative imidazolonepropionase n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PWW5_CLOSD
SCNpilot_bf_inoc_scaffold_60_curated_161
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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164550..164987
DNA (438bp) protein (146aa)
Hydrolase P-loop family n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XXL2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETI92775.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
ATP/GTP hydrolase; K06925 UPF0079 ATP-binding protein
SCNpilot_bf_inoc_scaffold_60_curated_162
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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165016..165687
DNA (672bp) protein (224aa)
Universal bacterial protein YeaZ n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5X0K9_9CLOT
Universal bacterial protein YeaZ {ECO:0000313|EMBL:CDA09248.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
Inactive homolog of metal-dependent proteases, putative molecular chaperone
SCNpilot_bf_inoc_scaffold_60_curated_163
Cohnella sp. VKM B-2846, Cohnella, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

165689..166147
DNA (459bp) protein (153aa)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1WSX4_ANEAE
Alanine acetyltransferase {ECO:0000313|EMBL:KIL35738.1}; TaxID=1590652 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Cohnella.;" source="Cohnella sp. VKM B-2846.;"
ribosomal-protein-alanine acetyltransferase
SCNpilot_bf_inoc_scaffold_60_curated_164
Peptostreptococcus stomatis, Peptostreptococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


166172..167197
DNA (1026bp) protein (342aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=596315 species="Bacteria; Firmicutes; Clostridia;
gcp; o-sialoglycoprotein endopeptidase (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Peptostreptococcus stomatis DSM 17678 RepID=E0E265_9FIRM
SCNpilot_bf_inoc_scaffold_60_curated_165
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(167691..167924)
DNA (234bp) protein (78aa)
Acyl carrier protein n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0SUF1_SYNGF
acyl carrier protein; K02078 acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
SCNpilot_bf_inoc_scaffold_60_curated_166
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(168040..169944)
DNA (1905bp) protein (635aa)
ABC transporter related n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MJL5_ALKOO
ABC transporter; K06158 ATP-binding cassette, subfamily F, member 3
ABC transporter related {ECO:0000313|EMBL:ABW19997.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_60_curated_167
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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170161..170799
DNA (639bp) protein (213aa)
Redox-sensing transcriptional repressor Rex n=2 Tax=Clostridium sordellii RepID=T0CVB8_CLOSO
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131, ECO:0000313|EMBL:CEQ08228.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
redox-sensing transcriptional repressor Rex; K01926 redox-sensing transcriptional repressor
SCNpilot_bf_inoc_scaffold_60_curated_168
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

170927..172108
DNA (1182bp) protein (394aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ABG86544.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ABG86544.1};; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
Acetyl-CoA acetyltransferase n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SQY7_CLOPS
SCNpilot_bf_inoc_scaffold_60_curated_169
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

172155..172637
DNA (483bp) protein (161aa)
Transcriptional regulator, MarR family n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TLG9_ALKMQ
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABR47037.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_60_curated_170
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

172854..174086
DNA (1233bp) protein (411aa)
Transporter, monovalent cation:proton antiporter-2 family n=2 Tax=Clostridium botulinum RepID=C3KZW7_CLOB6
transporter, monovalent cation:proton antiporter-2 family
Sodium/hydrogen exchanger family protein {ECO:0000313|EMBL:AJE12325.1}; TaxID=1408283 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum CDC_1436.;"
SCNpilot_bf_inoc_scaffold_60_curated_171
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(174391..174555)
DNA (165bp) protein (55aa)
Ferredoxin n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=FER_CLOSD
ferredoxin
Ferredoxin; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
SCNpilot_bf_inoc_scaffold_60_curated_172
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

174963..176306
DNA (1344bp) protein (448aa)
gdhA; glutamate dehydrogenase, nADP-specific (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
Glutamate dehydrogenase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ASN4_9CLOT
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
SCNpilot_bf_inoc_scaffold_60_curated_173
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

176722..178356
DNA (1635bp) protein (545aa)
Transcriptional regulator, CdaR n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TWU1_ALKMQ
transcriptional regulator CdaR
Transcriptional regulator, CdaR {ECO:0000313|EMBL:ABR50659.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_60_curated_174
Haloplasma contractile, Haloplasma, Haloplasmatales, Bacteria

Not on your lists

178446..180488
DNA (2043bp) protein (681aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1033810 species="Bacteria; Haloplasmatales; Haloplasmataceae; Haloplasma.;" source="Haloplasma contractile SSD-17B.;"
urocanate hydratase (EC:4.2.1.49); K01712 urocanate hydratase [EC:4.2.1.49]
Urocanate hydratase protein n=1 Tax=Haloplasma contractile SSD-17B RepID=F7PW21_9BACT
SCNpilot_bf_inoc_scaffold_60_curated_175
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

180685..183495
DNA (2811bp) protein (937aa)
Putative uncharacterized protein n=1 Tax=Eubacteriaceae bacterium CM5 RepID=G9XDB4_9FIRM
Serine/threonine protein kinase {ECO:0000313|EMBL:KGG80489.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
serine/threonine kinase, regulatory protein rbh
SCNpilot_bf_inoc_scaffold_60_curated_176
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

183512..185182
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3]
Formate--tetrahydrofolate ligase n=1 Tax=Eubacterium acidaminophilum RepID=FTHS_EUBAC rbh
SCNpilot_bf_inoc_scaffold_60_curated_177
Desulfotignum phosphitoxidans, Desulfotignum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

185722..186408
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0FWY4_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EMS79573.1}; TaxID=1286635 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfotignum.;" source="Desulfotignum phosphitoxidans DSM 13687.;"
hypothetical protein; K07150
SCNpilot_bf_inoc_scaffold_60_curated_178
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

186875..188176
DNA (1302bp) protein (434aa)
Xanthine/uracil/vitamin C permease n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MLL8_ALKOO
xanthine/uracil/vitamin C permease; K06901 putative MFS transporter, AGZA family, xanthine/uracil permease
Xanthine/uracil/vitamin C permease {ECO:0000313|EMBL:ABW17935.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_60_curated_179
Caldicellulosiruptor obsidiansis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

188319..189260
DNA (942bp) protein (314aa)
8-oxoguanine DNA glycosylase; K03660 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
8-oxoguanine DNA glycosylase domain-containing protein n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9TL67_CALOO
8-oxoguanine DNA glycosylase domain-containing protein {ECO:0000313|EMBL:ADL42749.1}; TaxID=608506 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47).;"
SCNpilot_bf_inoc_scaffold_60_curated_180
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

189303..190520
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B775A0
hypothetical protein; K07181 putative signal transduction protein containing EAL and modified HD-GYP domains
Tax=BJP_08E140C01_Clostridiales_46_19
Displaying items 151-180 of 185 in total

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