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SCNpilot_bf_inoc_scaffold_16_curated

Search features with annotation key words

Displaying items 31-60 of 540 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_16_curated_31
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47787..48182)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Marinobacter nanhaiticus D15-8W RepID=N6WWX8_9ALTE
Ketosteroid isomerase {ECO:0000313|EMBL:KIO48353.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_16_curated_32
unknown

Not on your lists

comp(48650..50794)
DNA (2145bp) protein (715aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_16_curated_33
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50960..53671)
DNA (2712bp) protein (904aa)
PAS domain S-box n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJ77_AZOSU
PAS domain S-box
PAS domain S-box {ECO:0000313|EMBL:AEV26495.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_bf_inoc_scaffold_16_curated_34
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53933..55015)
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036F4F12
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_bf_inoc_scaffold_16_curated_35
unknown

Not on your lists

55341..55664
DNA (324bp) protein (108aa)
hypothetical protein, partial n=1 Tax=Acidovorax radicis RepID=UPI0002376DFD
SCNpilot_bf_inoc_scaffold_16_curated_36
unknown

Not on your lists

55704..56042
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_16_curated_37
Aeromicrobium marinum, Aeromicrobium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(59020..61578)
DNA (2559bp) protein (853aa)
Uncharacterized protein n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=E2S8X2_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFQ84627.1}; TaxID=585531 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Aeromicrobium.;" source="Aeromicrobium marinum DSM 15272.;"
S-layer domain-containing protein
SCNpilot_bf_inoc_scaffold_16_curated_38
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61790..63043
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003711589
polyhydroxyalkanoate depolymerase, intracellular
Polyhydroxyalkanoate depolymerase, intracellular {ECO:0000313|EMBL:AGG87912.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_16_curated_39
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63248..65629
DNA (2382bp) protein (794aa)
histidine kinase (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Halomonas sp. PBN3 RepID=U7NNA8_9GAMM
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_bf_inoc_scaffold_16_curated_40
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65822..66736)
DNA (915bp) protein (305aa)
peptidyl prolyl cis-trans isomerase, cyclophilin type precursor (EC:5.2.1.8); K01802 peptidylprolyl isomerase [EC:5.2.1.8]
peptidylprolyl isomerase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B54258
Uncharacterized protein {ECO:0000313|EMBL:KFN41554.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
SCNpilot_bf_inoc_scaffold_16_curated_41
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

67122..68795
DNA (1674bp) protein (558aa)
Tmem2 protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZC97_9BACT
Tmem2 protein {ECO:0000313|EMBL:EAY31898.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
SCNpilot_bf_inoc_scaffold_16_curated_42
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68870..71308)
DNA (2439bp) protein (813aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00036C42C3
Uncharacterized protein {ECO:0000313|EMBL:EYR67086.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
outer membrane receptor protein
SCNpilot_bf_inoc_scaffold_16_curated_43
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71610..72887)
DNA (1278bp) protein (426aa)
MFS transporter n=1 Tax=Singularimonas variicoloris RepID=UPI00037FBF31
Alpha-ketoglutarate transporter {ECO:0000313|EMBL:AKC86951.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
metabolite-proton symporter; K03761 MFS transporter, MHS family, alpha-ketoglutarate permease
SCNpilot_bf_inoc_scaffold_16_curated_44
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73438..75735)
DNA (2298bp) protein (766aa)
NHL repeat containing protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M5Z5_GEODF
NHL repeat containing protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
SCNpilot_bf_inoc_scaffold_16_curated_45
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76461..79049
DNA (2589bp) protein (863aa)
serine/threonine protein kinase (EC:2.7.11.1); K08282 non-specific serine/threonine protein kinase [EC:2.7.11.1]
serine/threonine protein kinase n=1 Tax=Salisaeta longa RepID=UPI0003B639AE
Uncharacterized protein {ECO:0000313|EMBL:AKC86860.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
SCNpilot_bf_inoc_scaffold_16_curated_46
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79030..80085)
DNA (1056bp) protein (352aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta n=1 Tax=mine drainage metagenome RepID=T0YFS0_9ZZZZ
2-oxoglutarate ferredoxin oxidoreductase subunit beta {ECO:0000313|EMBL:KFN50125.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
putative 2-oxoglutarate synthase subunit B, korB-like protein
SCNpilot_bf_inoc_scaffold_16_curated_47
unknown

Not on your lists

comp(80082..80369)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_16_curated_48
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80369..82246)
DNA (1878bp) protein (626aa)
ferredoxin oxidoreductase n=1 Tax=Rudaea cellulosilytica RepID=UPI00036C88DB
putative 2-oxoacid:acceptor oxidoreductase, alpha subunit
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_16_curated_49
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82246..84069)
DNA (1824bp) protein (608aa)
Glutamate synthase (NADPH) (EC:1.4.1.13)
glutamate synthase n=1 Tax=Rudaea cellulosilytica RepID=UPI00037D3496
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_16_curated_50
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84401..85477
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031FC1A8
(2Fe-2S)-binding protein {ECO:0000313|EMBL:AIF49002.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ring-hydroxylating dioxygenase, large terminal subunit
SCNpilot_bf_inoc_scaffold_16_curated_51
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85467..86783
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036E85A0
Uncharacterized protein {ECO:0000313|EMBL:KFN44790.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
amino acid permease; K03759 arginine:agmatine antiporter
SCNpilot_bf_inoc_scaffold_16_curated_52
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86791..87597)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CU15_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:KGB51660.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_16_curated_53
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87666..88235)
DNA (570bp) protein (190aa)
Putative lipoprotein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1CWK2_MYXXD
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:ABF90339.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
SCNpilot_bf_inoc_scaffold_16_curated_54
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88417..89097
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003793DC1
hypothetical protein; K09915 hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_16_curated_55
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

89039..91084
DNA (2046bp) protein (682aa)
hypothetical protein id=24556551 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
SCNpilot_bf_inoc_scaffold_16_curated_56
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91194..92534)
DNA (1341bp) protein (447aa)
N-acetylmuramoyl-L-alanine amidase id=2659757 bin=GWF1_Xanthomonadales_69_6 species=Ectothiorhodospira sp. PHS-1 genus=Ectothiorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
N-acetylmuramoyl-L-alanine amidase domain-containing protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_bf_inoc_scaffold_16_curated_57
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92635..93111)
DNA (477bp) protein (159aa)
ADP-binding protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAN6_9GAMM
ATP-binding protein {ECO:0000313|EMBL:AHX12622.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ATPase, YjeE family
SCNpilot_bf_inoc_scaffold_16_curated_58
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93104..94552)
DNA (1449bp) protein (483aa)
YjeF-like protein, hydroxyethylthiazole kinase-related protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYD6_9GAMM
yjeF-like protein, hydroxyethylthiazole kinase-related protein
YjeF-like protein, hydroxyethylthiazole kinase-related protein {ECO:0000313|EMBL:AGG89673.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_16_curated_59
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94724..95788
DNA (1065bp) protein (355aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000371D83F
iron-sulfur cluster binding protein, putative
SCNpilot_bf_inoc_scaffold_16_curated_60
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95945..97570)
DNA (1626bp) protein (542aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031CDFA5
glucose-6-phosphate isomerase
Displaying items 31-60 of 540 in total

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