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SCNpilot_bf_inoc_scaffold_16_curated

Search features with annotation key words

Displaying items 61-90 of 540 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_16_curated_61
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(98423..99271)
DNA (849bp) protein (283aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
pantoate--beta-alanine ligase; K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003668ACE
SCNpilot_bf_inoc_scaffold_16_curated_62
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(99271..100095)
DNA (825bp) protein (275aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ketopantoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Dyella japonica RepID=UPI000300D006
SCNpilot_bf_inoc_scaffold_16_curated_63
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(100192..100686)
DNA (495bp) protein (165aa)
putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E003C6
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:AIF48923.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_bf_inoc_scaffold_16_curated_64
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(100683..102125)
DNA (1443bp) protein (481aa)
Poly(A) polymerase I {ECO:0000256|HAMAP-Rule:MF_00957}; Short=PAP I {ECO:0000256|HAMAP-Rule:MF_00957};; EC=2.7.7.19 {ECO:0000256|HAMAP-Rule:MF_00957};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
polynucleotide adenylyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000345561F
poly(A) polymerase
SCNpilot_bf_inoc_scaffold_16_curated_65
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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102257..102580
DNA (324bp) protein (108aa)
ferredoxin n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B684EF
ferredoxin protein; K05524 ferredoxin
Putative ferredoxin protein {ECO:0000313|EMBL:CBA15699.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
SCNpilot_bf_inoc_scaffold_16_curated_66
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(102621..103160)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAM7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96518.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_16_curated_67
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(103206..104090)
DNA (885bp) protein (295aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035E272B
SCNpilot_bf_inoc_scaffold_16_curated_68
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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104234..104794
DNA (561bp) protein (187aa)
Glycine cleavage system regulatory protein {ECO:0000313|EMBL:KFN48969.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
Probable glycine cleavage system transcriptional repressor protein id=2750887 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
glycine cleavage system transcriptional repressor; K03567 glycine cleavage system transcriptional repressor
SCNpilot_bf_inoc_scaffold_16_curated_69
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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104797..105258
DNA (462bp) protein (154aa)
peroxiredoxin n=1 Tax=Dyella japonica RepID=UPI0002FAD9D0
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:AIF48929.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Peroxiredoxin
SCNpilot_bf_inoc_scaffold_16_curated_70
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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105339..106730
DNA (1392bp) protein (464aa)
Phoh-like protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7G8E8_XANCT
Phoh-like protein {ECO:0000313|EMBL:ELQ01996.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
PhoH family protein; K07175 PhoH-like ATPase
SCNpilot_bf_inoc_scaffold_16_curated_71
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(107002..108126)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037E7D51
SalD; K06076 long-chain fatty acid transport protein
Tax=GWF1_Xanthomonadales_69_6_curated
SCNpilot_bf_inoc_scaffold_16_curated_72
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

108330..109148
DNA (819bp) protein (273aa)
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
phosphomethylpyrimidine kinase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B69EC0
Uncharacterized protein {ECO:0000313|EMBL:KFN41176.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
SCNpilot_bf_inoc_scaffold_16_curated_73
unknown

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109285..109584
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_16_curated_74

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109581..111902
DNA (2322bp) protein (774aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036667C0
Marine sediment metagenome DNA, contig: S03H2_L06005 {ECO:0000313|EMBL:GAH40793.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_16_curated_75
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111966..112979)
DNA (1014bp) protein (338aa)
Isocitrate dehydrogenase {ECO:0000313|EMBL:KGI77890.1}; EC=1.1.1.41 {ECO:0000313|EMBL:KGI77890.1};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
isocitrate/isopropylmalate dehydrogenase; K00030 isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
isocitrate dehydrogenase n=1 Tax=Rudaea cellulosilytica RepID=UPI0003660BB7
SCNpilot_bf_inoc_scaffold_16_curated_76
unknown

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113069..114190
DNA (1122bp) protein (374aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_16_curated_77
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(114210..114596)
DNA (387bp) protein (129aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WUW0_PSEUU
alkylhydroperoxidase like protein
SCNpilot_bf_inoc_scaffold_16_curated_78
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(114593..114841)
DNA (249bp) protein (83aa)
Glutaredoxin n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKD8_9GAMM
Glutaredoxin {ECO:0000313|EMBL:EIL87679.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Glutaredoxin, GrxC family
SCNpilot_bf_inoc_scaffold_16_curated_79
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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115070..116749
DNA (1680bp) protein (560aa)
Putative beta-barrel assembly-enhancing protease {ECO:0000256|HAMAP-Rule:MF_00997}; EC=3.4.-.- {ECO:0000256|HAMAP-Rule:MF_00997};; Flags: Precursor;; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BAD49
putative Zn-dependent protease
SCNpilot_bf_inoc_scaffold_16_curated_80
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116798..117487
DNA (690bp) protein (230aa)
PhoB family transcriptional regulator n=1 Tax=Rudaea cellulosilytica RepID=UPI00037F4AF8
PhoB family transcriptional regulator {ECO:0000313|EMBL:GAN45784.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
phosphate regulon transcriptional regulatory protein PhoB
SCNpilot_bf_inoc_scaffold_16_curated_81
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117519..118829
DNA (1311bp) protein (437aa)
PAS/PAC sensor signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
histidine kinase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B2FD7E
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_16_curated_82
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

118829..119752
DNA (924bp) protein (308aa)
phosphate ABC transporter substrate-binding protein n=1 Tax=Pantoea sp. A4 RepID=UPI00036282DA
Phosphate ABC transporter substrate-binding protein {ECO:0000313|EMBL:AIX74578.1}; TaxID=1484157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH2.;"
phosphate binding protein; K02040 phosphate transport system substrate-binding protein
SCNpilot_bf_inoc_scaffold_16_curated_83

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119749..121836
DNA (2088bp) protein (696aa)
Polyphosphate kinase {ECO:0000313|EMBL:EQD58224.1}; EC=2.7.4.1 {ECO:0000313|EMBL:EQD58224.1};; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003722EBE
polyphosphate kinase 1
SCNpilot_bf_inoc_scaffold_16_curated_84
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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121904..123427
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037E8C52
Exopolyphosphatase {ECO:0000313|EMBL:EIL96412.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
exopolyphosphatase
SCNpilot_bf_inoc_scaffold_16_curated_85

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123509..124165
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003633DE8
Marine sediment metagenome DNA, contig: S01H1_S14329 {ECO:0000313|EMBL:GAG00995.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
SCNpilot_bf_inoc_scaffold_16_curated_86
unknown

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comp(124272..124772)
DNA (501bp) protein (167aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_16_curated_87

Not on your lists

comp(124902..126296)
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=uncultured bacterium A1Q1_fos_2037 RepID=L7W1J7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGC72435.1}; TaxID=1256558 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_2037.;"
SCNpilot_bf_inoc_scaffold_16_curated_88
unknown

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comp(126654..127151)
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_16_curated_89
unknown

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comp(127199..127963)
DNA (765bp) protein (255aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_16_curated_90
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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128301..128987
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000380840A
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADE16680.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
Displaying items 61-90 of 540 in total

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