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SCNpilot_bf_inoc_scaffold_16_curated

Search features with annotation key words

Displaying items 211-240 of 540 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_16_curated_211
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(264002..264481)
DNA (480bp) protein (160aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase id=2515668 bin=GWF1_Rhodobacteraceae_65_7 species=Xanthomonas sacchari genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
SCNpilot_bf_inoc_scaffold_16_curated_212
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(264661..265350)
DNA (690bp) protein (230aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000302DDDE
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
SCNpilot_bf_inoc_scaffold_16_curated_213
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(265347..265664)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000307CC1F
Cell division protein FtsB {ECO:0000256|HAMAP-Rule:MF_00599, ECO:0000256|SAAS:SAAS00014481}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
septum formation initiator
SCNpilot_bf_inoc_scaffold_16_curated_214
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(265675..266970)
DNA (1296bp) protein (432aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
eno; enolase (2-phosphoglycerate dehydratase) protein (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11]
Enolase id=2515678 bin=GWF1_Rhodobacteraceae_65_7 species=Xanthomonas translucens genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
SCNpilot_bf_inoc_scaffold_16_curated_215
unknown

Not on your lists

comp(266986..267210)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_16_curated_216
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(267215..268054)
DNA (840bp) protein (280aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonad
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B50B0C
3-deoxy-8-phosphooctulonate synthase
SCNpilot_bf_inoc_scaffold_16_curated_217
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(268051..269712)
DNA (1662bp) protein (554aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
CTP synthetase n=1 Tax=Dyella japonica RepID=UPI0002EEC87D
CTP synthase
SCNpilot_bf_inoc_scaffold_16_curated_218
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

270021..271814
DNA (1794bp) protein (598aa)
Xaa-Pro aminopeptidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPH1_9GAMM
Xaa-Pro aminopeptidase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_16_curated_219
Synechococcus sp. RS9917, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

271855..272964
DNA (1110bp) protein (370aa)
UDP-N-Acetylglucosamine 2-epimerase (EC:5.1.3.14)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003717191
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:EAQ69592.1}; TaxID=221360 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. RS9917.;"
SCNpilot_bf_inoc_scaffold_16_curated_220
unknown

Not on your lists

273074..274135
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037BB6AD
SCNpilot_bf_inoc_scaffold_16_curated_221
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

274123..276324
DNA (2202bp) protein (734aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036F2C25
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABJ85304.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_bf_inoc_scaffold_16_curated_222

Not on your lists

276321..277073
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C1CAF
Marine sediment metagenome DNA, contig: S01H1_L10020 {ECO:0000313|EMBL:GAF94359.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
type 11 methyltransferase
SCNpilot_bf_inoc_scaffold_16_curated_223
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

277360..279249
DNA (1890bp) protein (630aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
parE; Topoisomerase IV subunit B (EC:5.99.1.-); K02622 topoisomerase IV subunit B [EC:5.99.1.-]
DNA topoisomerase IV subunit B n=1 Tax=Rudaea cellulosilytica RepID=UPI000377D884
SCNpilot_bf_inoc_scaffold_16_curated_224
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

279591..282362
DNA (2772bp) protein (924aa)
Large repetitive protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QTW5_9DELT
Large repetitive protein {ECO:0000313|EMBL:EPX60078.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
OmpA family protein
SCNpilot_bf_inoc_scaffold_16_curated_225
unknown

Not on your lists

comp(282512..282715)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_16_curated_226
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(282762..283541)
DNA (780bp) protein (260aa)
N-formylglutamate amidohydrolase; K01458 N-formylglutamate deformylase [EC:3.5.1.68]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000380B95F
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:AKC85876.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
SCNpilot_bf_inoc_scaffold_16_curated_227
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(283634..285424)
DNA (1791bp) protein (597aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR68237.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
peptidase S15; K06978 id=24442057 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Novosphingobium lindaniclasticum genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hydrolase coce/nond family protein
SCNpilot_bf_inoc_scaffold_16_curated_228
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(285576..286832)
DNA (1257bp) protein (419aa)
dadA; D-amino acid dehydrogenase subunit; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1] rbh
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036EC758
Amino acid dehydrogenase {ECO:0000313|EMBL:AHX12445.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_bf_inoc_scaffold_16_curated_229
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(287168..288121)
DNA (954bp) protein (318aa)
Putative exported protein n=3 Tax=Xanthomonas campestris pv. campestris RepID=B0RN42_XANCB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM39829.1}; TaxID=190485 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 /; NCPPB 528 / LMG 568 / P 25).;"
SCNpilot_bf_inoc_scaffold_16_curated_230
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

288305..289231
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BV04_NITHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE15354.1}; Flags: Precursor;; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_bf_inoc_scaffold_16_curated_231
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

289828..292857
DNA (3030bp) protein (1010aa)
Protein kinase domain-containing protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UQM8_PSEUP
protein kinase domain-containing protein
Protein kinase domain-containing protein {ECO:0000313|EMBL:AER55760.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_bf_inoc_scaffold_16_curated_232
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(293026..293232)
DNA (207bp) protein (69aa)
Cold shock protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJU0_9GAMM
Cold shock protein {ECO:0000313|EMBL:EIL87481.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cold shock protein
SCNpilot_bf_inoc_scaffold_16_curated_233
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(293446..294189)
DNA (744bp) protein (248aa)
Probable S-methyl-5'-thioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.44 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
5'-deoxy-5'-methylthioadenosine phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
5''''-methylthioadenosine phosphorylase n=1 Tax=Dyella ginsengisoli RepID=UPI00034A4AC3
SCNpilot_bf_inoc_scaffold_16_curated_234
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(294200..294739)
DNA (540bp) protein (180aa)
Hypoxanthine-guanine phosphoribosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEV1_9GAMM
hypoxanthine-guanine phosphoribosyltransferase
Hypoxanthine-guanine phosphoribosyltransferase {ECO:0000313|EMBL:AGG89334.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_16_curated_235

Not on your lists

comp(294748..295755)
DNA (1008bp) protein (336aa)
beta-glucosidase-like glycosyl hydrolase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000369C0AC
Glycoside hydrolase family 3 domain protein {ECO:0000313|EMBL:EQD59782.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCNpilot_bf_inoc_scaffold_16_curated_236
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(295756..296268)
DNA (513bp) protein (171aa)
hypothetical protein; K01768 adenylate cyclase [EC:4.6.1.1]
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002DAE71B
CYTH domain protein {ECO:0000313|EMBL:KJV34642.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
SCNpilot_bf_inoc_scaffold_16_curated_237
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(296283..297587)
DNA (1305bp) protein (435aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037153B4
SCNpilot_bf_inoc_scaffold_16_curated_238
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(297703..298278)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR91_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95154.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_16_curated_239
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(298294..300315)
DNA (2022bp) protein (674aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034923CB
Uncharacterized protein {ECO:0000313|EMBL:EIL87488.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_16_curated_240
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

300375..301103
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F73522
Histidine kinase {ECO:0000313|EMBL:AHX13622.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
Displaying items 211-240 of 540 in total

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