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SCNpilot_bf_inoc_scaffold_16_curated

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Displaying items 241-270 of 540 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_16_curated_241
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(301324..302037)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000379E8D9
DNA replication and repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_16_curated_242
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(302084..302998)
DNA (915bp) protein (305aa)
GTPase Era n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPM0_9GAMM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
GTP-binding protein Era
SCNpilot_bf_inoc_scaffold_16_curated_243
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(302988..303656)
DNA (669bp) protein (223aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Rhodanobacter denitrificans RepID=M4NGX1_9GAMM
SCNpilot_bf_inoc_scaffold_16_curated_244
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(303762..304151)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VM50_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88291.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_16_curated_245
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(304167..304970)
DNA (804bp) protein (268aa)
lepB; signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] rbh
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
signal peptidase I n=1 Tax=Methylococcus capsulatus RepID=UPI00030F6A8E
SCNpilot_bf_inoc_scaffold_16_curated_246
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(305032..306822)
DNA (1791bp) protein (597aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
elongation factor 4 n=1 Tax=Rudaea cellulosilytica RepID=UPI000375F8B5
GTP-binding protein LepA; K03596 GTP-binding protein LepA
SCNpilot_bf_inoc_scaffold_16_curated_247
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(306981..308432)
DNA (1452bp) protein (484aa)
periplasmic protease (EC:3.4.21.-); K01362 [EC:3.4.21.-]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035DD5D0
Protease Do {ECO:0000313|EMBL:KGI77465.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_bf_inoc_scaffold_16_curated_248
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(308656..309279)
DNA (624bp) protein (208aa)
Negative regulator of sigma E activity n=1 Tax=Rhodanobacter denitrificans RepID=I4WR81_9GAMM
negative regulator of sigma E activity
Negative regulator of sigma E activity {ECO:0000313|EMBL:AGG89347.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_16_curated_249
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(309285..309872)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376D47E
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:AIF48357.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
RNA polymerase sigma factor RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_bf_inoc_scaffold_16_curated_250
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(310320..312938)
DNA (2619bp) protein (873aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000346E992
Uncharacterized protein {ECO:0000313|EMBL:KGI77467.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
diguanylate cyclase (GGDEF) domain-containing protein
SCNpilot_bf_inoc_scaffold_16_curated_251
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(312938..313426)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR78_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_16_curated_252
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

313555..315591
DNA (2037bp) protein (679aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35 4.2.1.17)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Dyella ginsengisoli RepID=UPI00034AD8A1
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AHX13634.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_bf_inoc_scaffold_16_curated_253
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(315952..316863)
DNA (912bp) protein (304aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum FQY_4.;"
2-dehydropantoate 2-reductase n=2 Tax=Ralstonia solanacearum RepID=Q8Y307_RALSO
SCNpilot_bf_inoc_scaffold_16_curated_254
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(316863..317228)
DNA (366bp) protein (122aa)
Type IV pilus biogenesis protein PilZ {ECO:0000313|EMBL:KGQ18942.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
Type IV fimbriae assembly protein id=2697548 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Stenotrophomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
putative pilus biogenesis protein PilZ; K02676 type IV pilus assembly protein PilZ
SCNpilot_bf_inoc_scaffold_16_curated_255
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(317230..318198)
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036CB075
DNA polymerase III, delta'' subunit
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_16_curated_256
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(318195..318842)
DNA (648bp) protein (216aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
thymidylate kinase (EC:2.7.4.9)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037BB0F9
SCNpilot_bf_inoc_scaffold_16_curated_257
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(318839..319900)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037ACDA9
Aminodeoxychorismate lyase {ECO:0000313|EMBL:EIL88956.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein; K07082 UPF0755 protein
SCNpilot_bf_inoc_scaffold_16_curated_258
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(319893..320717)
DNA (825bp) protein (275aa)
aminodeoxychorismate lyase apoprotein (EC:4.1.3.38)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D8169A
Aminodeoxychorismate lyase {ECO:0000313|EMBL:AIF47735.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_bf_inoc_scaffold_16_curated_259
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(320714..322102)
DNA (1389bp) protein (463aa)
Putative anthranilate synthase component I {ECO:0000313|EMBL:EKU23939.1}; EC=4.1.3.27 {ECO:0000313|EMBL:EKU23939.1};; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
trpE; Anthranilate/para-aminobenzoate synthase; K01657 anthranilate synthase component I [EC:4.1.3.27]
Putative anthranilate synthase component I n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8YYZ4_XANCT
SCNpilot_bf_inoc_scaffold_16_curated_260
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(322197..323435)
DNA (1239bp) protein (413aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41)
3-oxoacyl-ACP synthase n=1 Tax=Dyella japonica RepID=UPI0002EC8AC5
SCNpilot_bf_inoc_scaffold_16_curated_261
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(323625..323864)
DNA (240bp) protein (80aa)
acyl carrier protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037A77E0
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
acpP; acyl carrier protein; K02078 acyl carrier protein
SCNpilot_bf_inoc_scaffold_16_curated_262
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(324078..324821)
DNA (744bp) protein (248aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-ketoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLQ5_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_16_curated_263
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(324881..325825)
DNA (945bp) protein (315aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6H1_9GAMM
malonyl CoA-acyl carrier protein transacylase
SCNpilot_bf_inoc_scaffold_16_curated_264
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(326004..326993)
DNA (990bp) protein (330aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
3-oxoacyl-ACP synthase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B6B89B
SCNpilot_bf_inoc_scaffold_16_curated_265
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(327111..327305)
DNA (195bp) protein (65aa)
50S ribosomal protein L32 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B34F5D
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
SCNpilot_bf_inoc_scaffold_16_curated_266
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(327415..327888)
DNA (474bp) protein (158aa)
Putative metal-binding protein, possibly nucleic-acid binding protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLQ1_9GAMM
putative metal-binding protein, possibly nucleic-acid binding protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_bf_inoc_scaffold_16_curated_267
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

328048..328473
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B55639
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_bf_inoc_scaffold_16_curated_268
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

328470..329093
DNA (624bp) protein (208aa)
Maf-like protein UUA_07698 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKH8_9GAMM
Maf-like protein UUA_07698 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
MAF protein
SCNpilot_bf_inoc_scaffold_16_curated_269
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(329090..330673)
DNA (1584bp) protein (528aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034D8377
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:EIL95559.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
SCNpilot_bf_inoc_scaffold_16_curated_270
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

330697..331656
DNA (960bp) protein (320aa)
ATPase n=1 Tax=Dyella japonica RepID=UPI0003741B8C
ATPase AAA {ECO:0000313|EMBL:AIF47724.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
MoxR-like ATPase
Displaying items 241-270 of 540 in total

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