ggKbase home page

SCNpilot_bf_inoc_scaffold_33_curated

Search features with annotation key words

Displaying items 31-60 of 566 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_33_curated_31
unknown

Not on your lists

36833..37357
DNA (525bp) protein (175aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_33_curated_32
unknown

Not on your lists

37354..37698
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_33_curated_33
Xanthomonas euvesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38466..40049)
DNA (1584bp) protein (528aa)
Phage-related integrase n=1 Tax=Xanthomonas campestris pv. vesicatoria (strain 85-10) RepID=Q3BVC9_XANC5
phage-related integrase
Phage-related integrase {ECO:0000313|EMBL:CAJ23185.1}; TaxID=316273 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. vesicatoria (strain 85-10).;"
SCNpilot_bf_inoc_scaffold_33_curated_34
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40447..42837
DNA (2391bp) protein (797aa)
Putative prolin-rich exported protein n=1 Tax=Azoarcus sp. KH32C RepID=H0PUX4_9RHOO
putative prolin-rich exported protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_bf_inoc_scaffold_33_curated_35

Not on your lists

42834..43139
DNA (306bp) protein (102aa)
ThiS, thiamine-biosynthesis n=1 Tax=mine drainage metagenome RepID=T0YJI2_9ZZZZ
ThiS, thiamine-biosynthesis {ECO:0000313|EMBL:EQD33318.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
thiamine biosynthesis protein ThiS; K03154 sulfur carrier protein
SCNpilot_bf_inoc_scaffold_33_curated_36
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43377..44168
DNA (792bp) protein (264aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
Thiazole synthase n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UEZ7_XANAP
ThiG; thiazole biosynthesis protein; K03149 thiamine biosynthesis ThiG
SCNpilot_bf_inoc_scaffold_33_curated_37
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44168..44872
DNA (705bp) protein (235aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
tRNA (guanine-N(7)-)-methyltransferase; K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSX7_9GAMM
SCNpilot_bf_inoc_scaffold_33_curated_38
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44897..46744
DNA (1848bp) protein (616aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037BFA38
Potassium transporter TrkA {ECO:0000313|EMBL:GAN45349.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
di-/tricarboxylate transporter
SCNpilot_bf_inoc_scaffold_33_curated_39
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46994..47338)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00036D2485
Ferredoxin {ECO:0000313|EMBL:GAN45350.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase
SCNpilot_bf_inoc_scaffold_33_curated_40
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47404..47697
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003083F33
Uncharacterized protein {ECO:0000313|EMBL:AHX11905.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_bf_inoc_scaffold_33_curated_41
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47704..48186)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035EEB79
Uncharacterized protein {ECO:0000313|EMBL:KFN43622.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
ribosomal-protein-alanine acetyltransferase
SCNpilot_bf_inoc_scaffold_33_curated_42
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48171..48650)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035F8762
Uncharacterized protein {ECO:0000313|EMBL:EIL99646.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_33_curated_43
unknown

Not on your lists

comp(48647..49252)
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037B4826
SCNpilot_bf_inoc_scaffold_33_curated_44
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49249..50175)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000371CE8E
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_51_14_curated
SCNpilot_bf_inoc_scaffold_33_curated_45
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50198..51004)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036826E3
ABC transporter; K02065 putative ABC transport system ATP-binding protein
Tax=RBG_16_Gammaproteobacteria_51_14_curated
SCNpilot_bf_inoc_scaffold_33_curated_46
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51001..51801)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003828279
Uncharacterized protein {ECO:0000313|EMBL:KHF25850.1}; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
ABC-type transport system; K02066 putative ABC transport system permease protein
SCNpilot_bf_inoc_scaffold_33_curated_47
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51798..52124)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037F3AF4
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
anti-anti-sigma regulatory factor
SCNpilot_bf_inoc_scaffold_33_curated_48
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52121..53815)
DNA (1695bp) protein (565aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037CD268
Serine phosphatase RsbU {ECO:0000313|EMBL:CCG41100.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
Serine phosphatase RsbU; K07315 sigma-B regulation protein RsbU (phosphoserine phosphatase)
SCNpilot_bf_inoc_scaffold_33_curated_49
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53812..54612)
DNA (801bp) protein (267aa)
phosphatidylserine synthase (EC:2.7.8.8)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036D6649
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000313|EMBL:AIF49239.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_bf_inoc_scaffold_33_curated_50
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54857..55297
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSD7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AIF49240.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_33_curated_51
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55307..55633
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:CDH46340.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
SCNpilot_bf_inoc_scaffold_33_curated_52
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(55774..57480)
DNA (1707bp) protein (569aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
prolyl-tRNA synthetase n=1 Tax=Dyella japonica RepID=UPI00030FCED6
prolyl-tRNA synthetase, family II
SCNpilot_bf_inoc_scaffold_33_curated_53
unknown

Not on your lists

comp(57585..59129)
DNA (1545bp) protein (515aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_33_curated_54
unknown

Not on your lists

comp(59218..60081)
DNA (864bp) protein (288aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_33_curated_55
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60480..61718)
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003462CBB
Uncharacterized protein {ECO:0000313|EMBL:EIL90131.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_33_curated_56

Not on your lists

61776..62654
DNA (879bp) protein (293aa)
Membrane protein containing DUF6, transmembrane n=1 Tax=mine drainage metagenome RepID=T1CKW7_9ZZZZ
Membrane protein containing DUF6, transmembrane {ECO:0000313|EMBL:EQD69040.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_33_curated_57
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62799..63410)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000362605A
DNA methylase {ECO:0000313|EMBL:GAN45650.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
2OG-Fe(II) oxygenase
SCNpilot_bf_inoc_scaffold_33_curated_58

Not on your lists

comp(63407..64615)
DNA (1209bp) protein (403aa)
CoA-transferase n=1 Tax=uncultured organism RepID=M1NRC2_9ZZZZ
CoA-transferase {ECO:0000313|EMBL:AGF87244.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_bf_inoc_scaffold_33_curated_59
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64689..66101)
DNA (1413bp) protein (471aa)
amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit (EC:6.3.5.-)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NAY8_9GAMM
Amidase {ECO:0000313|EMBL:GAN45651.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_bf_inoc_scaffold_33_curated_60
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66239..67036
DNA (798bp) protein (266aa)
Transcriptional regulator, GntR family n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I832_BORPD
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CAP41185.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Displaying items 31-60 of 566 in total

View Taxonomy