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SCNpilot_bf_inoc_scaffold_306_curated

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_306_curated_1
unknown

Not on your lists

comp(2..184)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_306_curated_2
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(430..2100)
DNA (1671bp) protein (557aa)
Putative major facilitator superfamily transmembrane transport protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7H9A4_XANCT
Permeases of the major facilitator superfamily
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_bf_inoc_scaffold_306_curated_3
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2113..3483)
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SYF7_XANCT
Uncharacterized protein {ECO:0000313|EMBL:CCP39912.1}; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_306_curated_4
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3693..5639
DNA (1947bp) protein (649aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
acetyl-coenzyme A synthetase (EC:6.2.1.1)
Acetyl-CoA synthetase (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BEW3_9ZZZZ
SCNpilot_bf_inoc_scaffold_306_curated_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5728..6411
DNA (684bp) protein (228aa)
LuxR family two component transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBU9_9GAMM
LuxR family two component transcriptional regulator {ECO:0000313|EMBL:EIL96940.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
SCNpilot_bf_inoc_scaffold_306_curated_6
unknown

Not on your lists

comp(6427..6852)
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_306_curated_7
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6936..10436)
DNA (3501bp) protein (1167aa)
ATPase n=1 Tax=Dyella ginsengisoli RepID=UPI000348023A
ATPase {ECO:0000313|EMBL:GAN45136.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Na+/proline symporter
SCNpilot_bf_inoc_scaffold_306_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10525..11202
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036864C0
phosphopantetheinyl transferase
Phosphopantetheinyl transferase {ECO:0000313|EMBL:AGG87199.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_bf_inoc_scaffold_306_curated_9
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11284..12939
DNA (1656bp) protein (552aa)
Acetylornithine deacetylase n=2 Tax=Marinobacter RepID=U7H285_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:CDI01397.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_306_curated_10
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13014..13613
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003723C5C
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_bf_inoc_scaffold_306_curated_11
unknown

Not on your lists

13595..14050
DNA (456bp) protein (152aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_306_curated_12
Glaciecola pallidula, Glaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14064..15023
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036B034F
Uncharacterized protein {ECO:0000313|EMBL:GAC27317.1}; TaxID=1121922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Glaciecola.;" source="Glaciecola pallidula DSM 14239 = ACAM 615.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_306_curated_13
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15204..17372
DNA (2169bp) protein (723aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376BCA1
Beta-lactamase {ECO:0000313|EMBL:CCE07999.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
penicillin-binding protein AmpH
SCNpilot_bf_inoc_scaffold_306_curated_14
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17359..18108
DNA (750bp) protein (250aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
pyridoxine 5'-phosphate synthase (EC:2.6.99.2)
Pyridoxine 5'-phosphate synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W887_9GAMM
SCNpilot_bf_inoc_scaffold_306_curated_15
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18303..18701)
DNA (399bp) protein (133aa)
biopolymer transporter ExbD n=1 Tax=Methylobacter sp. UW 659-2-H10 RepID=UPI000361A504
exbD; biopolymer transport ExbD/TolR protein; K03559 biopolymer transport protein ExbD
Biopolymer transporter ExbD {ECO:0000313|EMBL:AIF48766.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_bf_inoc_scaffold_306_curated_16
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19150..19578)
DNA (429bp) protein (143aa)
Biopolymer transport ExbD1 protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUJ2_9GAMM
Biopolymer transporter ExbD {ECO:0000313|EMBL:KJV36493.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
biopolymer transport protein
SCNpilot_bf_inoc_scaffold_306_curated_17
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19582..20442)
DNA (861bp) protein (287aa)
ExbB n=1 Tax=Lysobacter enzymogenes RepID=D1M898_LYSEN
Biopolymer transporter ExbB {ECO:0000313|EMBL:GAN45132.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
biopolymer transport protein
SCNpilot_bf_inoc_scaffold_306_curated_18
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20478..21068)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036BA33B
Energy transducer TonB {ECO:0000313|EMBL:KJV36496.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
TonB family protein
SCNpilot_bf_inoc_scaffold_306_curated_19

Not on your lists

comp(21334..22650)
DNA (1317bp) protein (439aa)
TPR repeat-containing protein n=1 Tax=mine drainage metagenome RepID=T0Y335_9ZZZZ
TPR repeat family protein {ECO:0000313|EMBL:EQD44798.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_306_curated_20
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23131..25542)
DNA (2412bp) protein (804aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Dyella ginsengisoli RepID=UPI000346D8E8
SCNpilot_bf_inoc_scaffold_306_curated_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25608..26687)
DNA (1080bp) protein (360aa)
DNA replication and repair protein RecF n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VL98_9GAMM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
recF; recombination protein F; K03629 DNA replication and repair protein RecF
SCNpilot_bf_inoc_scaffold_306_curated_22
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26770..27870)
DNA (1101bp) protein (367aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Rudaea cellulosilytica RepID=UPI0003614516
SCNpilot_bf_inoc_scaffold_306_curated_23
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28090..29442)
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037D166C
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
chromosomal replication initiator protein DnaA
SCNpilot_bf_inoc_scaffold_306_curated_24
Desulfonatronospira thiodismutans, Desulfonatronospira, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


29599..29733
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SNH0_9DELT
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=555779 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfohalobiaceae; Desulfonatronospira.;" source="Desulfonatronospira thiodismutans ASO3-1.;"
LSU ribosomal protein l34p; K02914 large subunit ribosomal protein L34
SCNpilot_bf_inoc_scaffold_306_curated_25
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29754..30107
DNA (354bp) protein (118aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ribonuclease P protein component (EC:3.1.26.5)
ribonuclease P n=1 Tax=Dyella ginsengisoli RepID=UPI0003490267
SCNpilot_bf_inoc_scaffold_306_curated_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30229..31941
DNA (1713bp) protein (571aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003715A57
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
preprotein translocase subunit YidC
SCNpilot_bf_inoc_scaffold_306_curated_27
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32026..33375
DNA (1350bp) protein (450aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
tRNA modification GTPase MnmE n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUB8_9GAMM
tRNA modification GTPase trmE
SCNpilot_bf_inoc_scaffold_306_curated_28
BJP_IG2069_Syntrophobacterales_47_18, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33523..33993)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1R2_9GAMM
hypothetical protein
Tax=BJP_IG2069_Syntrophobacterales_47_18
SCNpilot_bf_inoc_scaffold_306_curated_29
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34112..34519)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YBC9_THIV6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL74297.1}; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
SCNpilot_bf_inoc_scaffold_306_curated_30
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34790..35761
DNA (972bp) protein (324aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM50981.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
Displaying items 1-30 of 80 in total

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