ggKbase home page

RTP_11222018_0_1um_scaffold_1194

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_1194_1
Oceanimonas sp. GK1, Oceanimonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..146
DNA (144bp) protein (48aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase {ECO:0000256|HAMAP-Rule:MF_01636, ECO:0000256|SAAS:SAAS00011098}; EC=4.1.1.- {ECO:0000256|HAMAP-Rule:MF_01636, ECO:0000256|SAAS:SAAS00011102};; Polyprenyl p-hydroxybenzoate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01636}; TaxID=511062 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Oceanimonas.;" source="Oceanimonas sp. (strain GK1).;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Oceanimonas sp. (strain GK1) RepID=H2G1H6_OCESG
3-octaprenyl-4-hydroxybenzoate carboxy-lyase
RTP_11222018_0_1um_scaffold_1194_2
Xanthomonas oryzae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

169..1356
DNA (1188bp) protein (396aa)
chromosome segregation protein SMC n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002378543
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ98252.1}; TaxID=383407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas oryzae pv. oryzicola (strain BLS256).;"
RTP_11222018_0_1um_scaffold_1194_3
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1353..1931
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036B7E4F
Uncharacterized protein {ECO:0000313|EMBL:EXI87469.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1194_4
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2192..2362
DNA (171bp) protein (57aa)
Putative uncharacterized protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SIN1_GALCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL56194.1}; Flags: Precursor;; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
RTP_11222018_0_1um_scaffold_1194_5

Not on your lists

2458..2595
DNA (138bp) protein (46aa)
Diacylglycerol kinase {ECO:0000313|EMBL:CBI10746.1}; EC=2.7.1.107 {ECO:0000313|EMBL:CBI10746.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Diacylglycerol kinase n=1 Tax=mine drainage metagenome RepID=E6QU24_9ZZZZ
diacylglycerol kinase
RTP_11222018_0_1um_scaffold_1194_6
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2779..4083
DNA (1305bp) protein (435aa)
Serine/threonine-protein kinase PknD {ECO:0000313|EMBL:GAO33126.1}; EC=2.7.11.1 {ECO:0000313|EMBL:GAO33126.1};; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
Serine/threonine-protein kinase-like domain n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SJ82_GALCS
Serine/threonine-protein kinase-like domain
RTP_11222018_0_1um_scaffold_1194_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4096..5028
DNA (933bp) protein (311aa)
Sulfoxide reductase catalytic subunit YedY id=1347825 bin=GWE1_T_denit_62_9 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
sulfoxide reductase catalytic subunit YedY
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_1194_8
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5028..6920
DNA (1893bp) protein (631aa)
phrB; deoxyribodipyrimidine photo-lyase (EC:4.1.99.3)
Deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:AAQ61142.1}; EC=4.1.99.3 {ECO:0000313|EMBL:AAQ61142.1};; TaxID=243365 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /; NBRC 12614 / NCIMB 9131 / NCTC 9757).;"
Deoxyribodipyrimidine photo-lyase n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NSE5_CHRVO
RTP_11222018_0_1um_scaffold_1194_9
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6964..7263
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI00036C5907
Uncharacterized protein {ECO:0000313|EMBL:KDP83945.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
RTP_11222018_0_1um_scaffold_1194_10
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7260..7682
DNA (423bp) protein (141aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
pirin n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI00036155FA
mvpA; plasmid maintenance protein
RTP_11222018_0_1um_scaffold_1194_11
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7939..9075
DNA (1137bp) protein (379aa)
cell division protein Fic n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035D287C
Fic family protein
Fic family protein {ECO:0000313|EMBL:AIA54050.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
RTP_11222018_0_1um_scaffold_1194_12
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9147..9449
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CS50_SIDLE
hypothetical protein
Tax=GWA2_Gallionellales_54_124_curated
RTP_11222018_0_1um_scaffold_1194_13
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9452..9880
DNA (429bp) protein (143aa)
Transcriptional regulator, XRE family n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CS49_SIDLE
XRE family transcriptional regulator
Tax=GWA2_Gallionellales_54_124_curated
RTP_11222018_0_1um_scaffold_1194_14

Not on your lists

comp(9950..10663)
DNA (714bp) protein (238aa)
High-affinity branched-chain amino acid transport ATP-binding protein livF (LIV-I protein F) n=1 Tax=mine drainage metagenome RepID=E6QRC9_9ZZZZ
High-affinity branched-chain amino acid transport ATP-binding protein livF (LIV-I protein F) {ECO:0000313|EMBL:CBI09801.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ABC transporter
RTP_11222018_0_1um_scaffold_1194_15

Not on your lists

comp(10660..11442)
DNA (783bp) protein (261aa)
High-affinity branched-chain amino acid transport ATP-binding protein BraF n=1 Tax=mine drainage metagenome RepID=E6QRC8_9ZZZZ
High-affinity branched-chain amino acid transport ATP-binding protein BraF {ECO:0000313|EMBL:CBI09800.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ABC transporter
RTP_11222018_0_1um_scaffold_1194_16
CG_Delta_06, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11435..12484)
DNA (1050bp) protein (350aa)
branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein id=12496169 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
branched-chain amino acid ABC transporter permease
Tax=CG_Delta_06
RTP_11222018_0_1um_scaffold_1194_17
CG_Delta_06, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12471..13400)
DNA (930bp) protein (310aa)
branched-chain amino acid ABC-type transport system, permease component; K01997 branched-chain amino acid transport system permease protein id=12496168 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
branched-chain amino acid ABC-type transport system, permease component
Tax=CG_Delta_06
RTP_11222018_0_1um_scaffold_1194_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13489..14637)
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037D4D84
extracellular ligand-binding receptor
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_11222018_0_1um_scaffold_1194_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14752..15102)
DNA (351bp) protein (117aa)
Probable cytochrome C transmembrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFD3_THIDA
cytochrome C transmembrane protein
Probable cytochrome C transmembrane protein {ECO:0000313|EMBL:AAZ98679.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_1194_20

Not on your lists

comp(15204..15836)
DNA (633bp) protein (211aa)
Putative partition-related protein n=1 Tax=mine drainage metagenome RepID=E6QX83_9ZZZZ
Putative partition-related protein {ECO:0000313|EMBL:CBI11857.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Cobyrinic acid ac-diamide synthase
RTP_11222018_0_1um_scaffold_1194_21

Not on your lists

comp(15841..17697)
DNA (1857bp) protein (619aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxyacid dehydratase {ECO:0000313|EMBL:CBI11858.1}; EC=4.2.1.9 {ECO:0000313|EMBL:CBI11858.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
dihydroxy-acid dehydratase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036517D9
RTP_11222018_0_1um_scaffold_1194_22

Not on your lists

17755..18540
DNA (786bp) protein (262aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000313|EMBL:CBI11859.1}; EC=2.4.99.- {ECO:0000313|EMBL:CBI11859.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=1 Tax=mine drainage metagenome RepID=E6QX85_9ZZZZ
RTP_11222018_0_1um_scaffold_1194_23

Not on your lists

18544..19485
DNA (942bp) protein (314aa)
Putative LysR-family transcriptional regulator n=1 Tax=mine drainage metagenome RepID=E6QX86_9ZZZZ
Putative LysR-family transcriptional regulator {ECO:0000313|EMBL:CBI11860.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
LysR family transcriptional regulator
RTP_11222018_0_1um_scaffold_1194_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19516..20664
DNA (1149bp) protein (383aa)
Putative rubredoxin reductase id=1322704 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rubB; pyridine nucleotide-disulfide oxidoreductase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_1194_25

Not on your lists

comp(20773..21150)
DNA (378bp) protein (126aa)
Thioredoxin n=1 Tax=mine drainage metagenome RepID=E6QX90_9ZZZZ
Thioredoxin {ECO:0000313|EMBL:CBI11864.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
thioredoxin
RTP_11222018_0_1um_scaffold_1194_26
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21193..21570)
DNA (378bp) protein (126aa)
nitrogen regulatory protein P-II n=1 Tax=Curvibacter lanceolatus RepID=UPI00036E456E
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:EZP50114.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
Displaying 26 items

View Taxonomy