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sw_10_scaffold_561

Search features with annotation key words

Displaying items 1-30 of 42 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_10_scaffold_561_1
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


3..293
DNA (291bp) protein (97aa)
30S ribosomal protein S11 n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=RS11_UNCMA
rps11p; 30S ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000255|HAMAP-Rule:MF_01310}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvo
sw_10_scaffold_561_2
Halarchaeum acidiphilum, Halarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

297..1064
DNA (768bp) protein (256aa)
DNA-directed RNA polymerase subunit D {ECO:0000256|HAMAP-Rule:MF_00320}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00320};; TaxID=1261545 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Ha
DNA-directed RNA polymerase subunit D (EC:2.7.7.6)
DNA-directed RNA polymerase subunit D n=1 Tax=Halarchaeum acidiphilum MH1-52-1 RepID=U3AC08_9EURY
sw_10_scaffold_561_trna_1
unknown

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1079..1163
DNA (85bp)
transferRNA
sw_10_scaffold_561_3

Not on your lists


1194..1547
DNA (354bp) protein (118aa)
LSU ribosomal protein L18AE n=1 Tax=uncultured archaeon A07HB70 RepID=V4Y4R4_9ARCH
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329, ECO:0000256|RuleBase:RU000573}; TaxID=1412872 species="Archaea; environmental samples.;" source="uncultured archaeon A07HB70.;"
50S ribosomal protein L18ae
sw_10_scaffold_561_4
unknown

Not on your lists

1701..1913
DNA (213bp) protein (71aa)

This feature has no annotations

sw_10_scaffold_561_5
Halanaeroarchaeum sulfurireducens, Halanaeroarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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1907..2311
DNA (405bp) protein (135aa)
30S ribosomal protein S9 n=1 Tax=Halarchaeum acidiphilum RepID=UPI000373434E
30S ribosomal protein S9 {ECO:0000313|EMBL:AKH97941.1}; TaxID=1604004 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halanaeroarchaeum.;" source="Halanaeroarchaeum s
rps9p; 30S ribosomal protein S9P
sw_10_scaffold_561_6
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2332..2523
DNA (192bp) protein (64aa)
DNA-directed RNA polymerase subunit N {ECO:0000256|HAMAP-Rule:MF_00250}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00250};; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Ha
DNA-directed RNA polymerase subunit N n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N7B6_9EURY
RNA polymerase, N/8 Kd subunit
sw_10_scaffold_561_7

Not on your lists

2520..2705
DNA (186bp) protein (62aa)
RNA polymerase Rpb6; K03055 DNA-directed RNA polymerase subunit K [EC:2.7.7.6] id=24636124 bin=Halorubrum_J07HR59 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=Halorubrum_J07HR59
DNA-directed RNA polymerase subunit K {ECO:0000256|HAMAP-Rule:MF_00192}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00192};; TaxID=1412874 species="Archaea; environmental samples.;" source="uncultured arch
rpoK; DNA-directed RNA polymerase subunit K
sw_10_scaffold_561_8
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2706..3935
DNA (1230bp) protein (410aa)
eno; enolase (EC:4.2.1.11)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000
Enolase n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XRK5_NATM8
sw_10_scaffold_561_9
Haloferax sulfurifontis, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


3961..4755
DNA (795bp) protein (265aa)
30S ribosomal protein S2 n=2 Tax=Haloferax RepID=M0IRB8_9EURY
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291, ECO:0000256|SAAS:SAAS00012212}; TaxID=662480 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" sourc
rps2P; 30S ribosomal protein S2
sw_10_scaffold_561_10
Natronobacterium gregoryi, Natronobacterium, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5305..5697
DNA (393bp) protein (131aa)
Mevalonate kinase {ECO:0000256|HAMAP-Rule:MF_00217}; Short=MK {ECO:0000256|HAMAP-Rule:MF_00217};; Short=MVK {ECO:0000256|HAMAP-Rule:MF_00217};; EC=2.7.1.36 {ECO:0000256|HAMAP-Rule:MF_00217};; TaxID=79
Mevalonate kinase n=1 Tax=Natronobacterium gregoryi (strain ATCC 43098 / CCM 3738 / NCIMB 2189 / SP2) RepID=L0AL01_NATGS
mevalonate kinase
sw_10_scaffold_561_11
Candidatus Nanosalina sp. J07AB43, Candidatus Nanosalina, Nanohaloarchaea, Nanohaloarchaeota, Archaea

Not on your lists

5730..6452
DNA (723bp) protein (241aa)
kinase id=18314504 bin=Nanosalina tax=Nanosalina
Putative archaeal kinase {ECO:0000313|EMBL:EGQ43767.1}; TaxID=889948 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Nanosalina.;" source="Nanosalina sp. (strain J07AB43).;"
Isopentenyl phosphate kinase
sw_10_scaffold_561_12
Halovivax ruber, Halovivax, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6574..7626
DNA (1053bp) protein (351aa)
Isopentenyl-diphosphate delta-isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Short=IPP isomerase {ECO:0000256|HAMAP-Rule:MF_00354};; EC=5.3.3.2 {ECO:0000256|HAMAP-Rule:MF_00354};; Isopentenyl diphosphat
Isopentenyl-diphosphate delta-isomerase n=1 Tax=Halovivax ruber (strain DSM 18193 / JCM 13892 / XH-70) RepID=L0I7L3_HALRX
isopentenyl-diphosphate delta-isomerase, type 2
sw_10_scaffold_561_13
Natronococcus jeotgali, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7723..9063
DNA (1341bp) protein (447aa)
Ribonuclease J {ECO:0000256|HAMAP-Rule:MF_01492}; Short=RNase J {ECO:0000256|HAMAP-Rule:MF_01492};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01492};; TaxID=1227498 species="Archaea; Euryarchaeota; Haloba
Beta-lactamase domain protein n=1 Tax=Natrinema pallidum DSM 3751 RepID=L9Z3Q0_9EURY
beta-lactamase domain protein
sw_10_scaffold_561_14
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9349..10119
DNA (771bp) protein (257aa)
idsA_3; trifunctional short-chain (E)-prenyl diphosphate synthase ( dimethylallyltransferase / geranyltranstransferase / farnesytranstransferase ) (EC:2.5.1.1 2.5.1.10 2.5.1.29)
Geranylfarnesyl diphosphate synthase; Short=GFPS;; EC=2.5.1.81;; Farnesylgeranyl diphosphate synthase; Short=FGPP synthase;; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales
Geranylfarnesyl diphosphate synthase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=GFPS_NATPD
sw_10_scaffold_561_15
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10226..11896
DNA (1671bp) protein (557aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00016154}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00088701};; Glutamyl-tRNA synthetase {ECO:00
Glutamate--tRNA ligase n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BUH5_METCG
sw_10_scaffold_561_16
unknown

Not on your lists

11990..12712
DNA (723bp) protein (241aa)

This feature has no annotations

sw_10_scaffold_561_17
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(12761..14002)
DNA (1242bp) protein (414aa)
UbiD family decarboxylase n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2REU7_ARCPA
UbiD family decarboxylase
UbiD family decarboxylase {ECO:0000313|EMBL:ADB58641.1}; TaxID=572546 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus profundus
sw_10_scaffold_561_18
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14325..16049)
DNA (1725bp) protein (575aa)
Protein kinase n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DF37_9EURY
Protein kinase {ECO:0000313|EMBL:ELZ33352.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum JCM 14848.
ubiB_1; ubiquinone biosynthesis transmembrane protein 1
sw_10_scaffold_561_19
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(16076..16480)
DNA (405bp) protein (135aa)
heat shock protein Hsp20 id=24615791 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
Heat shock protein Hsp20 {ECO:0000313|EMBL:ESP88270.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Halob
hsp20C; Hsp20-type molecular chaperone
sw_10_scaffold_561_20
unknown

Not on your lists

16606..16947
DNA (342bp) protein (114aa)

This feature has no annotations

sw_10_scaffold_561_21
Halorubrum lacusprofundi, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16965..17528)
DNA (564bp) protein (188aa)
Sjogrens syndrome scleroderma autoantigen 1 n=1 Tax=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) RepID=B9LRU9_HALLT
hypothetical protein
Sjogrens syndrome scleroderma autoantigen 1 {ECO:0000313|EMBL:ACM57823.1}; TaxID=416348 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum l
sw_10_scaffold_561_22
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17572..17868)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MU02_HALMO
Uncharacterized protein {ECO:0000313|EMBL:EMA48813.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
hypothetical protein
sw_10_scaffold_561_23
Natronococcus occultus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17865..18548)
DNA (684bp) protein (228aa)
Tetratricopeptide repeat protein n=1 Tax=Natronococcus occultus SP4 RepID=L0JVU3_9EURY
tetratricopeptide repeat protein
Tetratricopeptide repeat protein {ECO:0000313|EMBL:AGB35983.1}; TaxID=694430 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus occultus
sw_10_scaffold_561_24
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18629..19051)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D008_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ28800.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
hypothetical protein
sw_10_scaffold_561_25
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19303..19701
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N6A4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA52225.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
hypothetical protein
sw_10_scaffold_561_26
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19920..20783
DNA (864bp) protein (288aa)
Zinc transporter n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QR08_9EURY
hypothetical protein
Zinc transporter {ECO:0000313|EMBL:EFW93422.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophilus DX25
sw_10_scaffold_561_27
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20827..21366
DNA (540bp) protein (180aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NV13_HALBP
thioredoxin reductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ELY29174.1}; Thioredoxin reductase {ECO:0000313|EMBL:ADQ69002.1}; Flags: Precursor;; TaxID=469382 species="Archaea; Euryarc
sw_10_scaffold_561_28
halophilic archaeon J07HX5, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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21451..21705
DNA (255bp) protein (85aa)
trxA3; thioredoxin
trxA3; thioredoxin; K03671 thioredoxin 1 id=24655849 bin=uncultured_archaeon_J07HX5 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultured_archaeon_J07HX5
Thioredoxin domain-containing protein {ECO:0000313|EMBL:ERG89237.1}; TaxID=1325472 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX5.;"
sw_10_scaffold_561_29
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21717..22085
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CS72_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ26051.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 135
hypothetical protein
Displaying items 1-30 of 42 in total

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