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SW_12_Halobacteria_71_31

In projects: SW_12  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_12_UNK

Properties

Avg. coverage: 31.41 Longest contig: 36.91 Kbp Bin length: 947.95 Kbp GC content: 70.91 %
Contigs count: 115 Features count: 1056 rRNAs count: 0 tRNAs count: 16

Genome completeness

near complete RP 29 / 55 MC: 5 BSCG 22 / 51 MC: 1 ASCG 31 / 38 MC: 2
Displaying items 1-50 of 115 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
sw_12_scaffold_3173
Class: Halobacteria (85.71%)
7 4305 bp 72.59 37.82 92.40
sw_12_scaffold_3943
Order: Halobacteriales (60%)
5 5138 bp 68.94 37.37 91.26
sw_12_scaffold_1947
Class: Halobacteria (72.73%)
11 10476 bp 72.40 36.50 81.24
sw_12_scaffold_1261
Order: Halobacteriales (50%)
10 12055 bp 71.04 35.69 90.76
sw_12_scaffold_1598
Class: Halobacteria (66.67%)
6 5220 bp 70.65 35.48 83.68
sw_12_scaffold_4190
Order: Halobacteriales (66.67%)
3 3884 bp 71.34 35.48 90.83
sw_12_scaffold_3454
Class: Halobacteria (100%)
5 4747 bp 71.08 35.41 97.96
sw_12_scaffold_591
Class: Halobacteria (76.92%)
26 17326 bp 70.82 35.26 93.70
sw_12_scaffold_2671
Order: Halobacteriales (50%)
4 3983 bp 70.65 35.20 87.82
sw_12_scaffold_4539
Class: Halobacteria (70%)
10 8722 bp 70.61 35.06 85.89
sw_12_scaffold_2504
Order: Halobacteriales (50%)
10 9080 bp 72.18 34.87 88.98
sw_12_scaffold_4494
Class: Halobacteria (60%)
10 7279 bp 71.03 34.85 78.72
sw_12_scaffold_2687
Order: Halobacteriales (57.14%)
7 8063 bp 70.45 34.57 94.10
sw_12_scaffold_4866
Order: Halobacteriales (60%)
5 4473 bp 69.51 34.38 90.07
sw_12_scaffold_3586
Order: Halobacteriales (75%)
4 3888 bp 69.55 34.31 72.38
sw_12_scaffold_7345
Class: Halobacteria (80%)
5 4036 bp 72.82 34.22 84.74
sw_12_scaffold_712
Class: Halobacteria (75%)
12 13134 bp 71.01 34.16 94.29
sw_12_scaffold_1442
Order: Halobacteriales (80%)
10 8282 bp 72.93 34.06 95.56
sw_12_scaffold_6968
Class: Halobacteria (83.33%)
6 4469 bp 68.47 34.01 83.04
sw_12_scaffold_2134
Class: Halobacteria (80%)
5 6469 bp 70.80 33.92 80.41
sw_12_scaffold_3602
Order: Halobacteriales (100%)
4 3348 bp 69.56 33.84 90.95
sw_12_scaffold_322
Class: Halobacteria (86.36%)
22 26358 bp 70.35 33.80 85.43
sw_12_scaffold_4296
Class: Halobacteria (100%)
3 3019 bp 71.45 33.75 87.64
sw_12_scaffold_675
Class: Halobacteria (77.78%)
18 18195 bp 71.98 33.64 87.67
sw_12_scaffold_1293
Class: Halobacteria (90%)
10 9730 bp 72.00 33.44 77.37
sw_12_scaffold_2957
Class: Halobacteria (71.43%)
7 8038 bp 70.04 33.39 89.35
sw_12_scaffold_2196
Class: Halobacteria (71.43%)
14 11378 bp 70.82 33.34 89.07
sw_12_scaffold_3573
Order: Halobacteriales (50%)
10 11255 bp 72.57 33.25 88.15
sw_12_scaffold_2223
Class: Halobacteria (100%)
7 4387 bp 70.69 33.05 91.02
sw_12_scaffold_1569
Class: Halobacteria (57.14%)
7 6767 bp 69.40 33.03 83.52
sw_12_scaffold_9003
Order: Halobacteriales (66.67%)
6 7428 bp 70.54 32.93 61.31
sw_12_scaffold_667
Order: Halobacteriales (50%)
12 11996 bp 71.76 32.84 92.41
sw_12_scaffold_4845
Class: Halobacteria (80%)
10 8598 bp 71.32 32.74 84.26
sw_12_scaffold_9354
Class: Halobacteria (50%)
6 4398 bp 69.21 32.70 78.85
sw_12_scaffold_294
Class: Halobacteria (75%)
16 17466 bp 70.00 32.69 82.58
sw_12_scaffold_5845
Class: Halobacteria (100%)
3 4379 bp 71.68 32.63 67.69
sw_12_scaffold_1008
Class: Halobacteria (90.91%)
11 10630 bp 71.76 32.62 88.05
sw_12_scaffold_1673
Class: Halobacteria (50%)
6 6104 bp 71.64 32.32 93.48
sw_12_scaffold_1086
Class: Halobacteria (69.23%)
13 10884 bp 71.13 32.20 83.32
sw_12_scaffold_651
Order: Halobacteriales (50%)
12 8936 bp 71.74 32.11 94.17
sw_12_scaffold_4422
Order: Halobacteriales (75%)
4 4782 bp 70.87 32.08 79.36
sw_12_scaffold_785
Order: Halobacteriales (53.33%)
15 15406 bp 71.87 31.94 93.82
sw_12_scaffold_3760
Order: Halobacteriales (50%)
6 5426 bp 71.88 31.90 93.55
sw_12_scaffold_4228
Order: Halobacteriales (50%)
4 3044 bp 72.31 31.83 88.21
sw_12_scaffold_2917
Order: Halobacteriales (73.33%)
15 13306 bp 69.27 31.78 85.41
sw_12_scaffold_1682
Class: Halobacteria (75%)
8 8966 bp 71.88 31.71 83.21
sw_12_scaffold_2136
Order: Halobacteriales (50%)
8 6988 bp 72.34 31.70 88.52
sw_12_scaffold_668
Order: Halobacteriales (50%)
10 10364 bp 71.70 31.58 94.37
sw_12_scaffold_4605
Class: Halobacteria (87.5%)
8 7518 bp 71.60 31.48 79.93
sw_12_scaffold_4014
Class: Halobacteria (72.73%)
11 8880 bp 68.63 31.46 89.22
Displaying items 1-50 of 115 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.